GOstats

Package: GOstats
Title: Tools for manipulating GO and microarrays.
Version: 2.38.1
Author: R. Gentleman and S. Falcon
Description: A set of tools for interacting with GO and microarray
data. A variety of basic manipulation tools for graphs,
hypothesis testing and other simple calculations.
Depends: R (>= 2.10), Biobase (>= 1.15.29), Category (>= 2.3.26), graph
Imports: methods, stats, stats4, AnnotationDbi (>= 0.0.89), Biobase (>=
1.15.29), Category (>= 2.3.26), GO.db (>= 1.13.0), RBGL,
annotate (>= 1.13.2), graph (>= 1.15.15), AnnotationForge
Suggests: hgu95av2.db (>= 1.13.0), ALL, GO.db (>= 1.13.0), annotate,
multtest, genefilter, RColorBrewer, Rgraphviz, xtable, SparseM,
GSEABase, geneplotter, org.Hs.eg.db, RUnit, BiocGenerics
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
License: Artistic-2.0
Collate: zzz.R AllClasses.R AllGenerics.R hyperGTest-methods.R
GOHyperGResult-accessors.R GOgraph.R GOhyptest.R hyperGtable.R
shortestPath.R triad.R
biocViews: Annotation, GO, MultipleComparison, GeneExpression,
Microarray, Pathways, GeneSetEnrichment, GraphAndNetwork
NeedsCompilation: no
Packaged: 2016-06-24 01:37:18 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'GOstats' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'GOstats'
    finding HTML links ... done
    GOHyperGResult-class                    html  
    GOstats-defunct                         html  
    GOstats-package                         html  
    Ndists                                  html  
    compCorrGraph                           html  
    compGdist                               html  
    hyperGTest                              html  
Rd warning: /tmp/RtmpugvmiZ/R.INSTALL60a75665c230/GOstats/man/hyperGTest.Rd:44: missing file link 'geneGoHyperGeoTest'
Rd warning: /tmp/RtmpugvmiZ/R.INSTALL60a75665c230/GOstats/man/hyperGTest.Rd:45: missing file link 'geneKeggHyperGeoTest'
    idx2dimnames                            html  
    makeGOGraph                             html  
    notConn                                 html  
    oneGOGraph                              html  
    probeSetSummary                         html  
    shortestPath                            html  
    simLL                                   html  
    termGraphs                              html  
    triadCensus                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GOstats)
Making 'packages.html' ... done