GUILDS

Package: GUILDS
Type: Package
Title: Implementation of Sampling Formulas for the Unified Neutral
Model of Biodiversity and Biogeography, with or without Guild
Structure
Version: 1.2.1
Date: 2015-04-21
Author: Thijs Janzen
Maintainer: Thijs Janzen <thijsjanzen@gmail.com>
Description: The GUILDS package combines a range of sampling formulas for the unified neutral model of biogeography and biodiversity. Alongside the sampling formulas, it includes methods to perform maximum likelihood optimization of the sampling formulas, methods to generate data given the neutral model, and methods to estimate the expected species abundance distribution. Sampling formulas included in the GUILDS package are the Etienne Sampling Formula (Etienne 2005), the guild sampling formula, where guilds are assumed to differ in dispersal ability (Janzen et al. 2015), and the guilds sampling formula conditioned on guild size (Janzen et al. 2015).
License: GPL-2
Depends: R (>= 3.0.2)
Imports: Rcpp (>= 0.11.0), pracma, subplex
LinkingTo: Rcpp
Packaged: 2015-04-21 14:27:07 UTC; janzen
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-04-21 17:42:25

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'GUILDS' ...
** package 'GUILDS' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c KDA_R.cpp -o KDA_R.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o GUILDS.so KDA_R.o RcppExports.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/GUILDS/libs
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'GUILDS'
    finding HTML links ... done
    GUILDS-internal                         html  
    GUILDS-package                          html  
    exampleData                             html  
    expected.SAD.Guilds.Conditional         html  
    expected.SAD.Guilds                     html  
    expected.SAD                            html  
    generate.ESF                            html  
    generate.Guilds.Cond                    html  
    generate.Guilds                         html  
    logLikelihood.ESF                       html  
    logLikelihood.Guilds.Conditional        html  
    logLikelihood.Guilds                    html  
    maxLikelihood.ESF                       html  
    maxLikelihood.Guilds.Conditional        html  
    maxLikelihood.Guilds                    html  
** building package indices
** testing if installed package can be loaded
* DONE (GUILDS)
Making 'packages.html' ... done