GenWin

Package: GenWin
Title: Spline Based Window Boundaries for Genomic Analyses
Version: 0.1
Date: 9/25/2014
Author: Timothy M. Beissinger <beissinger@ucdavis.edu>
Maintainer: Timothy M. Beissinger <beissinger@ucdavis.edu>
Description: Defines window or bin boundaries for the analysis of genomic data.
Boundaries are based on the inflection points of a cubic smoothing spline
fitted to the raw data. Along with defining boundaries, a technique to
evaluate results obtained from unequally-sized windows is provided.
Applications are particularly pertinent for, though not limited to, genome
scans for selection based on variability between populations (e.g. using
Wright's fixations index, Fst, which measures variability in subpopulations
relative to the total population).
Depends: R (>= 3.1.1)
Imports: pspline
License: MIT + file LICENSE
LazyData: true
Packaged: 2014-09-26 13:33:03 UTC; beissinger
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-26 16:51:09

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'GenWin' ...
** package 'GenWin' successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'GenWin'
    finding HTML links ... done
    chr6                                    html  
    splineAnalyze                           html  
** building package indices
** testing if installed package can be loaded
* DONE (GenWin)
Making 'packages.html' ... done