GeneExpressionSignature

Package: GeneExpressionSignature
Title: Gene Expression Signature based Similarity Metric
Version: 1.18.0
Date: 2012-10-24
Author: Yang Cao
Maintainer: Yang Cao <yiluheihei@gmail.com>, Fei Li
<pittacus@gmail.com>,Lu Han <hanl8910@gmail.com>
Description: This package gives the implementations of the gene
expression signature and its distance to each. Gene expression
signature is represented as a list of genes whose expression is
correlated with a biological state of interest. And its
distance is defined using a nonparametric, rank-based
pattern-matching strategy based on the Kolmogorov-Smirnov
statistic. Gene expression signature and its distance can be
used to detect similarities among the signatures of drugs,
diseases, and biological states of interest.
Depends: R (>= 2.13), Biobase, PGSEA
Suggests: apcluster, GEOquery
License: GPL-2
LazyLoad: yes
biocViews: GeneExpression
NeedsCompilation: no
Packaged: 2016-05-04 04:11:17 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'GeneExpressionSignature' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'GeneExpressionSignature'
    finding HTML links ... done
    GeneExpressionSignature                 html  
    RankMerging                             html  
    ScoreGSEA                               html  
    ScorePGSEA                              html  
    SignatureDistance                       html  
    exampleSet                              html  
    getRLs                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GeneExpressionSignature)
Making 'packages.html' ... done