GeneNet

Package: GeneNet
Version: 1.2.13
Date: 2015-09-02
Title: Modeling and Inferring Gene Networks
Author: Juliane Schaefer, Rainer Opgen-Rhein, and
Korbinian Strimmer.
Maintainer: Korbinian Strimmer <strimmerlab@gmail.com>
Depends: R (>= 3.0.2), corpcor (>= 1.6.8), longitudinal (>= 1.1.12),
fdrtool (>= 1.2.15)
Suggests: graph, Rgraphviz
Imports: stats, grDevices
Description: Analyzes gene expression
(time series) data with focus on the inference of gene networks.
In particular, GeneNet implements the methods of Schaefer and
Strimmer (2005a,b,c) and Opgen-Rhein and Strimmer (2006, 2007)
for learning large-scale gene association networks (including
assignment of putative directions).
License: GPL (>= 3)
URL: http://strimmerlab.org/software/genenet/
Packaged: 2015-08-02 15:00:33 UTC; strimmer
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-08-02 19:17:14

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'GeneNet' ...
** package 'GeneNet' successfully unpacked and MD5 sums checked
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'GeneNet'
    finding HTML links ... done
    GeneNet-internal                        html  
    GeneNet.package                         html  
    arth800                                 html  
    cor0.test                               html  
Rd warning: /tmp/Rtmpcu36lA/R.INSTALL1e41740c3bbc/GeneNet/man/cor0.test.Rd:22: missing file link 'pcor0'
    ecoli                                   html  
    ggm.estimate.pcor                       html  
Rd warning: /tmp/Rtmpcu36lA/R.INSTALL1e41740c3bbc/GeneNet/man/ggm.estimate.pcor.Rd:26: missing file link 'dyn.pcor'
Rd warning: /tmp/Rtmpcu36lA/R.INSTALL1e41740c3bbc/GeneNet/man/ggm.estimate.pcor.Rd:16: missing file link 'dyn.pcor'
Rd warning: /tmp/Rtmpcu36lA/R.INSTALL1e41740c3bbc/GeneNet/man/ggm.estimate.pcor.Rd:35: missing file link 'dyn.pcor'
Rd warning: /tmp/Rtmpcu36lA/R.INSTALL1e41740c3bbc/GeneNet/man/ggm.estimate.pcor.Rd:69: missing file link 'dyn.pcor'
    ggm.simulate.data                       html  
    ggm.simulate.pcor                       html  
    kappa2n                                 html  
    network.make.graph                      html  
    network.test.edges                      html  
    z.transform                             html  
** building package indices
** testing if installed package can be loaded
* DONE (GeneNet)
Making 'packages.html' ... done