GeneticTools

Package: GeneticTools
Type: Package
Title: Collection of Genetic Data Analysis Tools
Version: 0.3.1
Date: 2015-02-04
Author: Daniel Fischer
Maintainer: Daniel Fischer <daniel.fischer@luke.fi>
Depends: R (>= 3.0.2), gMWT (>= 0.3), snpStats, Rcpp (>= 0.9.13),
plotrix
LinkingTo: Rcpp, RcppArmadillo
Description: A loose collection of tools for the analysis of gene expression and genotype data, currently with main focus on eQTL and MDR analysis.
License: GPL (>= 2)
Packaged: 2015-02-04 10:03:09 UTC; medafi
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-02-04 13:12:25

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'GeneticTools' ...
** package 'GeneticTools' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c mdr.cpp -o mdr.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c timeCluster.cpp -o timeCluster.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o GeneticTools.so mdr.o timeCluster.o -L/home/ddbj/local/lib64/R/lib -lRlapack -L/home/ddbj/local/lib64/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/GeneticTools/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'GeneticTools'
    finding HTML links ... done
    GeneticTools-package                    html  
    Xgene                                   html  
    annotTrack                              html  
    calcDistances                           html  
    eQTL                                    html  
    genotData                               html  
    genotypePlot                            html  
    getRegionsOI                            html  
    gtfToBed                                html  
    mdr                                     html  
    plot.eqtl                               html  
    plot.mdr                                html  
    predict.mdr                             html  
    print.eqtl                              html  
    print.mdr                               html  
    realSNPs                                html  
    recodeData                              html  
    summary.eqtl                            html  
    visTrans                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GeneticTools)
Making 'packages.html' ... done