Last data update: 2014.03.03


Package: GiRaF
Type: Package
Title: Gibbs Random Fields Analysis
Version: 1.0
Date: 2016-02-13
Author: Julien Stoehr, Pierre Pudlo and Nial Friel
Maintainer: Julien Stoehr <>
Description: Allows calculation on, and
sampling from Gibbs Random Fields, and more precisely general
homogeneous Potts model. The primary tool is the exact computation of
the intractable normalising constant for small rectangular lattices.
Beside the latter function, it contains method that give exact sample from the likelihood
for small enough rectangular lattices or approximate sample from the
likelihood using MCMC samplers for large lattices.
License: GPL (>= 2)
Imports: methods, Rcpp (>= 0.12.3)
LinkingTo: Rcpp, RcppArmadillo, BH
Suggests: knitr
VignetteBuilder: knitr
NeedsCompilation: yes
Repository: CRAN
Packaged: 2016-02-24 16:48:11 UTC; jstoehr
Date/Publication: 2016-02-24 18:54:24

16 images, 4 functions, 0 datasets
● Reverse Depends: 0

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'GiRaF' ...
** package 'GiRaF' successfully unpacked and MD5 sums checked
** libs
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../inst/include/  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/BH/include"   -fpic  -g -O2 -c lattice.cpp -o lattice.o
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../inst/include/  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/BH/include"   -fpic  -g -O2 -c rcpp_module.cpp -o rcpp_module.o
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../inst/include/  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/BH/include"   -fpic  -g -O2 -c recursion.cpp -o recursion.o
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../inst/include/  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/BH/include"   -fpic  -g -O2 -c sampler.cpp -o sampler.o
g++ -std=c++11 -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o lattice.o rcpp_module.o recursion.o sampler.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/GiRaF/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'GiRaF'
    finding HTML links ... done
    GiRaF-package                           html  
    NC.mrf                                  html  
    exact.mrf                               html  
    sampler.mrf                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GiRaF)
Making 'packages.html' ... done