Gviz

Package: Gviz
Version: 1.16.1
Title: Plotting data and annotation information along genomic
coordinates
Author: Florian Hahne, Steffen Durinck, Robert Ivanek, Arne Mueller, Steve Lianoglou, Ge Tan <ge.tan09@imperial.ac.uk>, Lance Parsons <lparsons@princeton.edu>, Shraddha Pai <shraddha.pai@utoronto.ca>
Maintainer: Florian Hahne <florian.hahne@novartis.com>
Depends: R (>= 2.10.0), methods, S4Vectors (>= 0.9.25), IRanges (>=
1.99.18), GenomicRanges (>= 1.17.20), grid
Imports: XVector (>= 0.5.7), rtracklayer (>= 1.25.13), lattice,
RColorBrewer, biomaRt (>= 2.11.0), AnnotationDbi (>= 1.27.5),
Biobase (>= 2.15.3), GenomicFeatures (>= 1.17.22), BSgenome (>=
1.33.1), Biostrings (>= 2.33.11), biovizBase (>= 1.13.8),
Rsamtools (>= 1.17.28), latticeExtra (>= 0.6-26), matrixStats
(>= 0.8.14), GenomicAlignments (>= 1.1.16), GenomeInfoDb (>=
1.1.3), BiocGenerics (>= 0.11.3), digest (>= 0.6.8)
Suggests: xtable, BSgenome.Hsapiens.UCSC.hg19, BiocStyle
biocViews: Visualization, Microarray
Description: Genomic data analyses requires integrated visualization of known genomic information and new experimental data. Gviz uses the biomaRt and the rtracklayer packages to perform live annotation queries to Ensembl and UCSC and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data.
Collate: Gviz.R AllGenerics.R AllClasses.R Gviz-methods.R
License: Artistic-2.0
LazyLoad: yes
NeedsCompilation: no
Packaged: 2016-05-16 03:19:46 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'Gviz' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'Gviz'
    finding HTML links ... done
    AlignedReadTrack-class                  html  
    finding level-2 HTML links ... done

    AlignmentsTrack                         html  
    AnnotationTrack-class                   html  
    BiomartGeneRegionTrack-class            html  
    CustomTrack-class                       html  
    DataTrack-class                         html  
    DisplayPars-class                       html  
    GdObject-class                          html  
    GeneRegionTrack-class                   html  
    GenomeAxisTrack-class                   html  
    HighlightTrack-class                    html  
    IdeogramTrack-class                     html  
    ImageMap-class                          html  
    NumericTrack-class                      html  
    OverlayTrack-class                      html  
    RangeTrack-class                        html  
    ReferenceTrack-class                    html  
    SequenceTrack-class                     html  
    StackedTrack-class                      html  
    UcscTrack                               html  
    collapsing                              html  
    datasets                                html  
    exportTracks                            html  
    grouping                                html  
    plotTracks                              html  
    settings                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Gviz)
Making 'packages.html' ... done