HD2013SGI

Package: HD2013SGI
Type: Package
Title: Mapping genetic interactions in human cancer cells with RNAi and
multiparametric phenotyping
Version: 1.12.0
Author: Bernd Fischer
Maintainer: Bernd Fischer <b.fischer@dkfz.de>
Description: This package contains the experimental data and a complete executable transcript (vignette) of the analysis of the HCT116 genetic interaction matrix presented in the paper "Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping" by C. Laufer, B. Fischer, M. Billmann, W. Huber, M. Boutros; Nature Methods (2013) 10:427-31. doi: 10.1038/nmeth.2436.
License: Artistic-2.0
LazyLoad: true
Depends: R (>= 2.10.0), RColorBrewer, gplots, geneplotter, splots,
limma, vcd, LSD, EBImage
Suggests: BiocStyle
SystemRequirements: GNU make
biocViews: ExperimentData, CancerData, ColonCancerData,
MicrotitrePlateAssayData, CellCulture, Homo_sapiens_Data,
HighThroughputImagingData
NeedsCompilation: no
Packaged: 2016-05-07 20:40:24 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'HD2013SGI' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'HD2013SGI'
    finding HTML links ... done
    HD2013SGI-package                       html  
    HD2013SGIHeatmapHuman                   html  
    HD2013SGImaineffects                    html  
    HD2013SGIorderDim                       html  
    HD2013SGIselectByStability              html  
    Interactions                            html  
    QueryAnnotation                         html  
    TargetAnnotation                        html  
    datamatrix                              html  
    datamatrixfull                          html  
    featuresPerWell                         html  
    mainEffects                             html  
    nrOfInteractionsPerTarget               html  
    stabilitySelection                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (HD2013SGI)
Making 'packages.html' ... done