HLMdiag

Package: HLMdiag
Type: Package
Title: Diagnostic Tools for Hierarchical (Multilevel) Linear Models
Version: 0.3.1
Date: 2015-12-7
Author: Adam Loy <loyad01@gmail.com>
Maintainer: Adam Loy <loyad01@gmail.com>
Description: A suite of diagnostic tools for hierarchical
(multilevel) linear models. The tools include
not only leverage and traditional deletion diagnostics (Cook's
distance, covratio, covtrace, and MDFFITS) but also
convenience functions and graphics for residual analysis. Models
can be fit using either lmer in the 'lme4' package or lme in the 'nlme' package,
but only two-level models fit using lme are currently supported.
Depends: R (>= 2.15.0)
Imports: ggplot2 (>= 0.9.2), stats, methods, plyr, reshape2, MASS,
Matrix, RLRsim, mgcv
LinkingTo: Rcpp, RcppArmadillo
Suggests: mlmRev, WWGbook, lme4 (>= 1.0), nlme
License: GPL-2
LazyLoad: yes
LazyData: yes
Collate: 'diagnostic_functions.R' 'group_level_residual_functions.R'
'identification.R' 'plot_functions.R' 'quantile_functions.R'
'adjust_formula_lmList.R' 'case_delete.R' 'LSresids.R'
'HLMresid.R' 'help.R' 'influence_functions.R'
'utility_functions.R' 'rotate_ranefs.R' 'autism.R' 'ahd.R'
'radon.R'
URL: https://github.com/aloy/HLMdiag
BugReports: https://github.com/aloy/HLMdiag/issues
NeedsCompilation: yes
Packaged: 2015-12-11 19:26:48 UTC; loya
Repository: CRAN
Date/Publication: 2015-12-12 09:41:00

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'HLMdiag' ...
** package 'HLMdiag' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c cooksd_obs.cpp -o cooksd_obs.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c cooksd_subset.cpp -o cooksd_subset.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c covratio.cpp -o covratio.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c covtrace.cpp -o covtrace.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c linear_algebra_fnc.cpp -o linear_algebra_fnc.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c mdffits_subset.cpp -o mdffits_subset.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o HLMdiag.so cooksd_obs.o cooksd_subset.o covratio.o covtrace.o linear_algebra_fnc.o mdffits_subset.o -L/home/ddbj/local/lib64/R/lib -lRlapack -L/home/ddbj/local/lib64/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/HLMdiag/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'HLMdiag'
    finding HTML links ... done
    HLMdiag                                 html  
    HLMresid.mer                            html  
    LSresids.mer                            html  
    adjust_lmList.formula                   html  
    ahd                                     html  
    autism                                  html  
    case_delete.mer                         html  
    compare_eb_ls                           html  
    cooks.distance                          html  
    covratio                                html  
    diagnostics                             html  
    dotplot_diag                            html  
    ggplot_qqnorm                           html  
    group_qqnorm                            html  
    leverage.mer                            html  
    radon                                   html  
    rotate_ranef.mer                        html  
    rvc.mer                                 html  
    varcomp.mer                             html  
    wages                                   html  
** building package indices
** testing if installed package can be loaded
* DONE (HLMdiag)
Making 'packages.html' ... done