HMPTrees

Package: HMPTrees
Type: Package
Title: Statistical Object Oriented Data Analysis of RDP-Based Taxonomic
Trees from Human Microbiome Data
Version: 1.3
Date: 2016-01-14
Author: Patricio S. La Rosa, Elena Deych, Berkley Shands, William D. Shannon
Maintainer: Berkley Shands <rpackages@biorankings.com>
Depends: R (>= 3.0.0)
Imports: ape, HMP, dirmult, doParallel, foreach, parallel
Description: Tools to model, compare, and visualize populations of taxonomic tree objects.
License: Apache License (== 2.0)
LazyData: yes
NeedsCompilation: no
Packaged: 2016-01-19 19:15:22 UTC; Berkley
Repository: CRAN
Date/Publication: 2016-01-19 23:53:07

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'HMPTrees' ...
** package 'HMPTrees' successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'HMPTrees'
    finding HTML links ... done
    HMPTrees-internal                       html  
    HMPTrees-package                        html  
    checkTreeValidity                       html  
    compareTwoDataSets                      html  
    createAndPlot                           html  
    createTrees                             html  
    displayLegend                           html  
    formatData                              html  
    generateTree                            html  
    getMLEandLoglike                        html  
    mergeDataSets                           html  
    pairedCompareTwoDataSets                html  
    plotTree                                html  
    plotTreeDataMDS                         html  
    saliva                                  html  
    stool                                   html  
    throat                                  html  
    transformHMPTreetoHMP                   html  
    transformHMPtoHMPTree                   html  
    trimToTaxaLevel                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (HMPTrees)
Making 'packages.html' ... done