HTSFilter

Package: HTSFilter
Type: Package
Title: Filter replicated high-throughput transcriptome sequencing data
Version: 1.12.0
Date: 2015-03-04
Author: Andrea Rau, Melina Gallopin, Gilles Celeux, and Florence
Jaffrezic
Maintainer: Andrea Rau <andrea.rau@jouy.inra.fr>
Depends: methods, Biobase (>= 2.27.3), R (>= 3.2)
Imports: DESeq (>= 1.19.0), edgeR (>= 3.9.14), DESeq2 (>= 1.6.3)
Suggests: EDASeq (>= 2.1.4), BiocStyle
Description: This package implements a filtering procedure for
replicated transcriptome sequencing data based on a global
Jaccard similarity index in order to identify genes with low,
constant levels of expression across one or more experimental
conditions.
License: Artistic-2.0
LazyLoad: yes
biocViews: Sequencing, RNASeq, Preprocessing, DifferentialExpression,
GeneExpression, Normalization
NeedsCompilation: no
Packaged: 2016-05-04 04:51:03 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'HTSFilter' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'HTSFilter'
    finding HTML links ... done
    HTSBasicFilter                          html  
    HTSFilter-package                       html  
    HTSFilter                               html  
    normalizeData                           html  
    sultan                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (HTSFilter)
Making 'packages.html' ... done