HardyWeinberg

Package: HardyWeinberg
Type: Package
Title: Statistical Tests and Graphics for Hardy-Weinberg Equilibrium
Version: 1.5.6
Date: 2016-03-29
Author: Jan Graffelman <jan.graffelman@upc.edu>
Maintainer: Jan Graffelman <jan.graffelman@upc.edu>
Depends: R (>= 1.8.0), mice
Description: Contains tools for exploring Hardy-Weinberg equilibrium for
diallelic genetic marker data. All classical tests (chi-square, exact,
likelihood-ratio and permutation tests) for Hardy-Weinberg equilibrium
are included in the package, as well as functions for power computation and
for the simulation of marker data under equilibrium and disequilibrium.
Routines for dealing with markers on the X-chromosome are included.
Functions for testing equilibrium in the presence of missing data by
using multiple imputation are also provided. Implements several graphics
for exploring the equilibrium status of a large set of diallelic markers:
ternary plots with acceptance regions, log-ratio plots and Q-Q plots.
License: GPL (>= 2)
URL: http://www.r-project.org
NeedsCompilation: no
Packaged: 2016-03-29 17:39:03 UTC; jan
Repository: CRAN
Date/Publication: 2016-03-29 20:04:32

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'HardyWeinberg' ...
** package 'HardyWeinberg' successfully unpacked and MD5 sums checked
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'HardyWeinberg'
    finding HTML links ... done
    AFtest                                  html  
    Alzheimer                               html  
    GenerateSamples                         html  
    HWAlltests                              html  
    HWAlr                                   html  
    HWAlrPlot                               html  
    HWChisq                                 html  
    HWChisqMat                              html  
    HWChisqStats                            html  
    HWClo                                   html  
    HWClr                                   html  
    HWClrPlot                               html  
    HWCondProbAB                            html  
    HWD                                     html  
    HWData                                  html  
    HWExact                                 html  
    HWExactMat                              html  
    HWExactPrevious                         html  
    HWExactStats                            html  
    HWGenotypePlot                          html  
    HWIlr                                   html  
    HWIlrPlot                               html  
    HWLratio                                html  
    HWMissing                               html  
    HWPerm                                  html  
    HWPower                                 html  
    HWQqplot                                html  
    HWTernaryPlot                           html  
    HWf                                     html  
    HapMapCHBChr1                           html  
    HardyWeinberg-package                   html  
    MakeCounts                              html  
    MakeFactor                              html  
    Markers                                 html  
    Mourant                                 html  
    UniqueGenotypeCounts                    html  
    af                                      html  
    agcounts                                html  
    fisherz                                 html  
    ifisherz                                html  
    mac                                     html  
    maf                                     html  
    recode                                  html  
    vaf                                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (HardyWeinberg)
Making 'packages.html' ... done