IdMappingAnalysis

Package: IdMappingAnalysis
Imports: boot, mclust, RColorBrewer, Biobase
Maintainer: Alex Lisovich <alex.lisovich@gmail.com>, Roger Day
<day01@pitt.edu>
License: GPL-2
Title: ID Mapping Analysis
LazyData: yes
Type: Package
Author: Alex Lisovich, Roger Day
Description: Identifier mapping performance analysis
Version: 1.16.0
Date: 2013-05-24
Depends: R (>= 2.14), R.oo (>= 1.13.0), rChoiceDialogs
Collate: 'bootstrap.R' 'corr.R' 'corrData.R' 'data.R' 'dataFilter.R'
'zzz.R' 'display.R' 'idMap.R' 'idMapBase.R' 'idMapCounts.R'
'fit2clusters.R' 'expectedUtility.R' 'idMapDiff.R'
'idMapDiffCounts.R' 'IdMappingAnalysis-package.R'
'jointIdMap.plots.R' 'jointIdMap.R'
'jointUniquePairs.extensions.R'
'jointUniquePairs.interactive.plots.R'
'jointUniquePairs.plots.R' 'jointUniquePairs.R' 'misc.R'
'mixture.R' 'subset.R' 'uniquePairs.R'
biocViews: Annotation, MultipleComparison
NeedsCompilation: no
Packaged: 2016-05-04 04:27:22 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'IdMappingAnalysis' ...
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'IdMappingAnalysis'
    finding HTML links ... done
    000-LB-.IdMapBase                       html  
    Bootstrap                               html  
    Corr                                    html  
    CorrData                                html  
    CsvList.merge.Misc                      html  
    DataFilter                              html  
    Display                                 html  
    Generic.Roo                             html  
    IdMap                                   html  
    IdMapBase                               html  
    IdMapCounts                             html  
    IdMapDiff                               html  
    IdMapDiffCounts                         html  
    JointIdMap                              html  
    JointUniquePairs                        html  
    Misc                                    html  
    Mixture                                 html  
    Subset                                  html  
    UniquePairs                             html  
    aligned.IdMapBase                       html  
    as.IdMap.UniquePairs                    html  
    as.MultiSet.CorrData                    html  
    as.UniquePairs.IdMap                    html  
    as.data.frame.IdMapBase                 html  
    as.data.frame.JointIdMap                html  
    as.list.IdMap                           html  
    boxplot.JointUniquePairs                html  
    boxplotdataJitter.JointUniquePairs      html  
    byColNames.Subset                       html  
    byColumn.Subset                         html  
    byRow.Subset                            html  
    byRowNames.Subset                       html  
    clust.Mixture                           html  
    copy.Display                            html  
    corr.boxplot.JointUniquePairs           html  
    corr.plot.JointUniquePairs              html  
    create.Display                          html  
    create.UniquePairs                      html  
    diffCounts.plot.JointIdMap              html  
    dim.IdMapBase                           html  
    dimnames.IdMapBase                      html  
    do.apply.DataFilter                     html  
    do.glm.JointUniquePairs                 html  
    ecdf.plot.JointIdMap                    html  
    equals.UniquePairs                      html  
    examples                                html  
    expectedUtility                         html  
    fisherTransform.DataFilter              html  
    fisherTransformInverse.DataFilter       html  
    fisherTransformJacobean.DataFilter      html  
    fit2clusters                            html  
    getBootstrap.JointUniquePairs           html  
    getCompoundEvents.IdMapDiffCounts       html  
    getCompoundGroups.IdMapDiffCounts       html  
    getCorr.JointUniquePairs                html  
    getCorrData.JointUniquePairs            html  
    getCorrDataFrame.JointUniquePairs       html  
    getCounts.IdMap                         html  
    getCounts.JointIdMap                    html  
    getData.Corr                            html  
    getData.Mixture                         html  
    getDiff.JointIdMap                      html  
    getExperimentSet.CorrData               html  
    getIdMapList.JointIdMap                 html  
    getMapNames.JointIdMap                  html  
    getMapNames.JointUniquePairs            html  
    getMatch.UniquePairs                    html  
    getMatchInfo.JointIdMap                 html  
    getMatchInfo.JointUniquePairs           html  
    getMixture.JointUniquePairs             html  
    getName.IdMapBase                       html  
    getSampleNames.CorrData                 html  
    getStats.IdMapCounts                    html  
    getStats.Mixture                        html  
    getUnionIdMap.JointIdMap                html  
    getUniquePairs.Corr                     html  
    getUniquePairs.CorrData                 html  
    getUniquePairs.JointUniquePairs         html  
    interactive.corr.boxplot.JointUniquePairs
                                            html  
    interactive.corr.plot.JointUniquePairs
                                            html  
    interactive.mixture.boxplot.JointUniquePairs
                                            html  
    interactive.mixture.plot.JointUniquePairs
                                            html  
    interactive.plot.CorrData               html  
    interactive.plot.JointUniquePairs       html  
    interleave.Misc                         html  
    line.loess.Display                      html  
    line.unsorted.Display                   html  
    logTen.DataFilter                       html  
    merge.IdMap                             html  
    minAvgCountConstraint.DataFilter        html  
    minCountConstraint.DataFilter           html  
    minCountGroupConstraint.DataFilter      html  
    mixture.boxplot.JointUniquePairs        html  
    mixture.plot.JointUniquePairs           html  
    pack.experiments.CorrData               html  
    plot.Bootstrap                          html  
    plot.Corr                               html  
    plot.CorrData                           html  
    plot.IdMapCounts                        html  
    plot.IdMapDiffCounts                    html  
    plot.Mixture                            html  
    primaryIDs.IdMapBase                    html  
    primaryKey.CorrData                     html  
    primaryKey.IdMapBase                    html  
    primaryKey.Mixture                      html  
    progressMsg.Display                     html  
    removeNASeries.DataFilter               html  
    secondaryKey.CorrData                   html  
    secondaryKey.IdMapBase                  html  
    secondaryKey.Mixture                    html  
    subsetCorr.JointUniquePairs             html  
    subsetData.JointUniquePairs             html  
    subsetGroups.JointUniquePairs           html  
    summary.IdMapDiffCounts                 html  
    swapKeys.IdMap                          html  
    swapKeys.UniquePairs                    html  
    textBoundingBox.Display                 html  
    to.base.Misc                            html  
    to.binary.logical.Misc                  html  
    to.index.expr.Misc                      html  
    unique.UniquePairs                      html  
    words.Misc                              html  
    zoom.pars.Display                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (IdMappingAnalysis)
Making 'packages.html' ... done