Last data update: 2014.03.03
|
KEGGprofile
Package: KEGGprofile
Type: Package
Title: An annotation and visualization package for multi-types and
multi-groups expression data in KEGG pathway
Version: 1.14.0
Date: 2015-04-05
Author: Shilin Zhao, Yan Guo, Yu Shyr
Maintainer: Shilin Zhao <shilin.zhao@vanderbilt.edu>
Description: KEGGprofile is an annotation and visualization tool which
integrated the expression profiles and the function annotation in KEGG
pathway maps. The multi-types and multi-groups expression data can be
visualized in one pathway map. KEGGprofile facilitated more detailed
analysis about the specific function changes inner pathway or temporal
correlations in different genes and samples.
License: GPL (>= 2)
LazyLoad: yes
Imports: AnnotationDbi, png, TeachingDemos, XML, KEGG.db, KEGGREST, biomaRt
biocViews: Pathways, KEGG
NeedsCompilation: no
Packaged: 2016-05-05 03:30:21 UTC; biocbuild
Install log
* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'KEGGprofile' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'KEGGprofile'
finding HTML links ... done
col_by_value html
convertId html
download_KEGGfile html
download_latest_pathway html
find_enriched_pathway html
newIdMatrix html
parse_XMLfile html
pho_sites_count html
plot_pathway html
plot_pathway_cor html
plot_profile html
pro_pho_expr html
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (KEGGprofile)
Making 'packages.html' ... done
|