LaF

Package: LaF
Type: Package
Title: Fast access to large ASCII files
Version: 0.6.2
Date: 2015-01-28
Author: Jan van der Laan
Maintainer: Jan van der Laan <djvanderlaan@unrealizedtime.nl>
Description: Methods for fast access to large ASCII files. Currently the
following file formats are supported: comma separated format (csv) and fixed
width format. It is assumed that the files are too large to fit into memory,
although the package can also be used to efficiently access files that do
fit into memory. Methods are provided to access and process files blockwise.
Furthermore, an opened file can be accessed as one would an ordinary
data.frame. The LaF vignette gives an overview of the functionality
provided.
URL: https://github.com/djvanderlaan/LaF
License: GPL-3
LazyLoad: yes
Depends: methods
Suggests: testthat, yaml
LinkingTo: Rcpp
Imports: Rcpp (>= 0.11.1)
Collate: 'generics.R' 'laf.R' 'laf_column.R' 'meta.R' 'open.R'
'read_dm_blaise.R' 'stats.R' 'textutils.R' 'types.R'
'utility.R'
Packaged: 2015-01-28 13:21:08 UTC; dlan
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-01-28 20:27:18

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'LaF' ...
** package 'LaF' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c LaF.cpp -o LaF.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c column.cpp -o column.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c conversion.cpp -o conversion.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c csvreader.cpp -o csvreader.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c doublecolumn.cpp -o doublecolumn.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c factorcolumn.cpp -o factorcolumn.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c file.cpp -o file.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c fwfreader.cpp -o fwfreader.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c intcolumn.cpp -o intcolumn.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c reader.cpp -o reader.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c readermanager.cpp -o readermanager.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c stats.cpp -o stats.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c stringcolumn.cpp -o stringcolumn.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c textutils.cpp -o textutils.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o LaF.so LaF.o column.o conversion.o csvreader.o doublecolumn.o factorcolumn.o file.o fwfreader.o intcolumn.o reader.o readermanager.o stats.o stringcolumn.o textutils.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/LaF/libs
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'nrow' from package 'base' in package 'LaF'
Creating a generic function for 'ncol' from package 'base' in package 'LaF'
Creating a generic function for 'levels' from package 'base' in package 'LaF'
Creating a generic function for 'close' from package 'base' in package 'LaF'
** help
*** installing help indices
  converting help for package 'LaF'
    finding HTML links ... done
    begin                                   html  
    cindexing                               html  
    close                                   html  
    current_line                            html  
    datamodels                              html  
    detect_dm_csv                           html  
    determine_nlines                        html  
    get_lines                               html  
    goto                                    html  
    indexing                                html  
    laf-class                               html  
    laf_column-class                        html  
    laf_open                                html  
    laf_open_csv                            html  
    laf_open_fwf                            html  
    levels                                  html  
    names                                   html  
    ncol                                    html  
    next_block                              html  
    nrow                                    html  
    process_blocks                          html  
    read_dm_blaise                          html  
    read_lines                              html  
    sample_lines                            html  
    show                                    html  
    stats                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (LaF)
Making 'packages.html' ... done