Last data update: 2014.03.03
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Luminescence
Package: Luminescence
Type: Package
Title: Comprehensive Luminescence Dating Data Analysis
Version: 0.6.0
Date: 2016-05-30
Author: Sebastian Kreutzer [aut, trl, cre],
Michael Dietze [aut],
Christoph Burow [aut, trl, dtc],
Margret C. Fuchs [aut],
Christoph Schmidt [aut],
Manfred Fischer [aut, trl],
Johannes Friedrich [aut],
Norbert Mercier [aut],
Rachel K. Smedley [aut],
Julie Durcan [aut],
Georgina King [aut],
Markus Fuchs [ths]
Authors@R: c(
person("Sebastian", "Kreutzer", role = c("aut", "trl", "cre"), email = "sebastian.kreutzer@u-bordeaux-montaigne.fr"),
person("Michael", "Dietze", role = c("aut")),
person("Christoph", "Burow", role = c("aut", "trl", "dtc")),
person("Margret C.", "Fuchs", role = c("aut")),
person("Christoph", "Schmidt", role = c("aut")),
person("Manfred", "Fischer", role = c("aut", "trl")),
person("Johannes", "Friedrich", role = c("aut")),
person("Norbert", "Mercier", role = c("aut")),
person("Rachel K.", "Smedley", role = c("aut")),
person("Julie", "Durcan", role = c("aut")),
person("Georgina", "King", role = c("aut")),
person("Markus", "Fuchs", role = c("ths")))
Maintainer: Sebastian Kreutzer <sebastian.kreutzer@u-bordeaux-montaigne.fr>
Description: A collection of various R functions for the purpose of Luminescence
dating data analysis. This includes, amongst others, data import, export,
application of age models, curve deconvolution, sequence analysis and
plotting of equivalent dose distributions.
Contact: Package Developer Team <team@r-luminescence.de>
License: GPL-3
Depends: R (>= 3.3.0), utils
LinkingTo: Rcpp (>= 0.12.5), RcppArmadillo (>= 0.6.700.6.0)
Imports: bbmle (>= 1.0.18), data.table (>= 1.9.6), httr (>= 1.1.0),
matrixStats (>= 0.50.2), methods, Rcpp (>= 0.12.5), minpack.lm
(>= 1.2-0), raster (>= 2.5-2), readxl (>= 0.1.1), shape (>=
1.4.2), parallel, XML (>= 3.98-1.4), zoo (>= 1.7-13)
Suggests: RLumShiny (>= 0.1.0), RLumModel (>= 0.1.1), plotly (>=
3.4.13), rmarkdown (>= 0.9.6), rjags (>= 4-6), pander (>=
0.6.0), rstudioapi (>= 0.5)
URL: http://CRAN.R-project.org/package=Luminescence
Collate: 'Analyse_SAR.OSLdata.R' 'CW2pHMi.R' 'CW2pLM.R' 'CW2pLMi.R'
'CW2pPMi.R' 'Luminescence-package.R' 'RcppExports.R'
'replicate_RLum.R' 'RLum-class.R' 'names_RLum.R'
'structure_RLum.R' 'length_RLum.R' 'set_RLum.R' 'get_RLum.R'
'RLum.Analysis-class.R' 'RLum.Data-class.R' 'bin_RLum.Data.R'
'RLum.Data.Curve-class.R' 'RLum.Data.Image-class.R'
'RLum.Data.Spectrum-class.R' 'RLum.Results-class.R'
'Risoe.BINfileData2RLum.Analysis.R'
'Risoe.BINfileData2RLum.Data.Curve.R' 'set_Risoe.BINfileData.R'
'get_Risoe.BINfileData.R' 'RisoeBINfileData-class.R'
'Second2Gray.R' 'analyse_IRSAR.RF.R' 'analyse_SAR.CWOSL.R'
'analyse_SAR.TL.R' 'analyse_baSAR.R' 'analyse_pIRIRSequence.R'
'app_RLum.R' 'apply_CosmicRayRemoval.R'
'apply_EfficiencyCorrection.R' 'calc_AliquotSize.R'
'calc_CentralDose.R' 'calc_CommonDose.R'
'calc_CosmicDoseRate.R' 'calc_FadingCorr.R' 'calc_FastRatio.R'
'calc_FiniteMixture.R' 'calc_FuchsLang2001.R'
'calc_HomogeneityTest.R' 'calc_IEU.R' 'calc_MaxDose.R'
'calc_MinDose.R' 'calc_OSLLxTxRatio.R' 'calc_SourceDoseRate.R'
'calc_Statistics.R' 'calc_TLLxTxRatio.R'
'calc_ThermalLifetime.R' 'calc_gSGC.R'
'extract_IrradiationTimes.R' 'fit_CWCurve.R' 'fit_LMCurve.R'
'get_Layout.R' 'get_Quote.R' 'get_rightAnswer.R'
'internal_as.latex.table.R' 'internals_RLum.R'
'merge_RLum.Analysis.R' 'merge_RLum.Data.Curve.R'
'merge_RLum.R' 'merge_RLum.Results.R'
'merge_Risoe.BINfileData.R' 'methods_DRAC.R' 'methods_RLum.R'
'model_LuminescenceSignals.R' 'plot_AbanicoPlot.R'
'plot_DRTResults.R' 'plot_DetPlot.R'
'plot_FilterCombinations.R' 'plot_GrowthCurve.R'
'plot_Histogram.R' 'plot_KDE.R' 'plot_NRt.R'
'plot_RLum.Analysis.R' 'plot_RLum.Data.Curve.R'
'plot_RLum.Data.Image.R' 'plot_RLum.Data.Spectrum.R'
'plot_RLum.R' 'plot_RLum.Results.R' 'plot_RadialPlot.R'
'plot_Risoe.BINfileData.R' 'plot_ViolinPlot.R' 'read_BIN2R.R'
'read_Daybreak2R.R' 'read_SPE2R.R' 'read_XSYG2R.R'
'report_RLum.R' 'template_DRAC.R' 'tune_Data.R' 'use_DRAC.R'
'verify_SingleGrainData.R' 'write_R2BIN.R' 'zzz.R'
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-05-30 16:47:30 UTC; kreutzer
Repository: CRAN
Date/Publication: 2016-05-30 20:26:01
Install log
* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'Luminescence' ...
** package 'Luminescence' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -fpic -g -O2 -c analyse_IRSARRF_SRS.cpp -o analyse_IRSARRF_SRS.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -fpic -g -O2 -c create_UID.cpp -o create_UID.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o Luminescence.so RcppExports.o analyse_IRSARRF_SRS.o create_UID.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/Luminescence/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'Luminescence'
finding HTML links ... done
Analyse_SAR.OSLdata html
BaseDataSet.CosmicDoseRate html
CW2pHMi html
CW2pLM html
CW2pLMi html
CW2pPMi html
ExampleData.BINfileData html
ExampleData.CW_OSL_Curve html
ExampleData.DeValues html
ExampleData.FittingLM html
ExampleData.LxTxData html
ExampleData.LxTxOSLData html
ExampleData.RLum.Analysis html
ExampleData.RLum.Data.Image html
ExampleData.XSYG html
Luminescence-package html
RLum-class html
RLum.Analysis-class html
RLum.Data-class html
RLum.Data.Curve-class html
RLum.Data.Image-class html
RLum.Data.Spectrum-class html
RLum.Results-class html
Risoe.BINfileData-class html
Risoe.BINfileData2RLum.Analysis html
Second2Gray html
analyse_IRSAR.RF html
Rd warning: /tmp/RtmpOTOLSv/R.INSTALL50572f8a4161/Luminescence/man/analyse_IRSAR.RF.Rd:90: missing file link 'language-class'
analyse_SAR.CWOSL html
analyse_SAR.TL html
analyse_baSAR html
analyse_pIRIRSequence html
app_RLum html
apply_CosmicRayRemoval html
apply_EfficiencyCorrection html
Rd warning: /tmp/RtmpOTOLSv/R.INSTALL50572f8a4161/Luminescence/man/apply_EfficiencyCorrection.Rd:30: missing file link 'approx'
as html
bin_RLum.Data html
calc_AliquotSize html
calc_CentralDose html
calc_CommonDose html
calc_CosmicDoseRate html
calc_FadingCorr html
calc_FastRatio html
calc_FiniteMixture html
calc_FuchsLang2001 html
calc_HomogeneityTest html
calc_IEU html
calc_MaxDose html
calc_MinDose html
finding level-2 HTML links ... done
calc_OSLLxTxRatio html
calc_SourceDoseRate html
calc_Statistics html
calc_TLLxTxRatio html
calc_ThermalLifetime html
Rd warning: /tmp/RtmpOTOLSv/R.INSTALL50572f8a4161/Luminescence/man/calc_ThermalLifetime.Rd:136: missing file link 'rnorm'
calc_gSGC html
extract_IrradiationTimes html
fit_CWCurve html
fit_LMCurve html
get_Layout html
get_Quote html
get_RLum html
get_Risoe.BINfileData html
get_rightAnswer html
length_RLum html
merge_RLum.Analysis html
merge_RLum.Data.Curve html
Rd warning: /tmp/RtmpOTOLSv/R.INSTALL50572f8a4161/Luminescence/man/merge_RLum.Data.Curve.Rd:65: missing file link 'rowMins'
Rd warning: /tmp/RtmpOTOLSv/R.INSTALL50572f8a4161/Luminescence/man/merge_RLum.Data.Curve.Rd:70: missing file link 'rowMins'
merge_RLum html
merge_RLum.Results html
merge_Risoe.BINfileData html
methods_RLum html
model_LuminescenceSignals html
names_RLum html
plot_AbanicoPlot html
plot_DRTResults html
plot_DetPlot html
plot_FilterCombinations html
plot_GrowthCurve html
plot_Histogram html
plot_KDE html
plot_NRt html
plot_RLum.Analysis html
plot_RLum.Data.Curve html
plot_RLum.Data.Image html
plot_RLum.Data.Spectrum html
plot_RLum html
plot_RLum.Results html
plot_RadialPlot html
plot_Risoe.BINfileData html
plot_ViolinPlot html
read_BIN2R html
read_Daybreak2R html
read_SPE2R html
read_XSYG2R html
replicate_RLum html
report_RLum html
sTeve html
set_RLum html
set_Risoe.BINfileData html
structure_RLum html
template_DRAC html
tune_Data html
use_DRAC html
verify_SingleGrainData html
write_R2BIN html
** building package indices
** testing if installed package can be loaded
* DONE (Luminescence)
Making 'packages.html' ... done
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