Last data update: 2014.03.03

Luminescence

Package: Luminescence
Type: Package
Title: Comprehensive Luminescence Dating Data Analysis
Version: 0.6.0
Date: 2016-05-30
Author: Sebastian Kreutzer [aut, trl, cre],
Michael Dietze [aut],
Christoph Burow [aut, trl, dtc],
Margret C. Fuchs [aut],
Christoph Schmidt [aut],
Manfred Fischer [aut, trl],
Johannes Friedrich [aut],
Norbert Mercier [aut],
Rachel K. Smedley [aut],
Julie Durcan [aut],
Georgina King [aut],
Markus Fuchs [ths]
Authors@R: c(
person("Sebastian", "Kreutzer", role = c("aut", "trl", "cre"), email = "sebastian.kreutzer@u-bordeaux-montaigne.fr"),
person("Michael", "Dietze", role = c("aut")),
person("Christoph", "Burow", role = c("aut", "trl", "dtc")),
person("Margret C.", "Fuchs", role = c("aut")),
person("Christoph", "Schmidt", role = c("aut")),
person("Manfred", "Fischer", role = c("aut", "trl")),
person("Johannes", "Friedrich", role = c("aut")),
person("Norbert", "Mercier", role = c("aut")),
person("Rachel K.", "Smedley", role = c("aut")),
person("Julie", "Durcan", role = c("aut")),
person("Georgina", "King", role = c("aut")),
person("Markus", "Fuchs", role = c("ths")))
Maintainer: Sebastian Kreutzer <sebastian.kreutzer@u-bordeaux-montaigne.fr>
Description: A collection of various R functions for the purpose of Luminescence
dating data analysis. This includes, amongst others, data import, export,
application of age models, curve deconvolution, sequence analysis and
plotting of equivalent dose distributions.
Contact: Package Developer Team <team@r-luminescence.de>
License: GPL-3
Depends: R (>= 3.3.0), utils
LinkingTo: Rcpp (>= 0.12.5), RcppArmadillo (>= 0.6.700.6.0)
Imports: bbmle (>= 1.0.18), data.table (>= 1.9.6), httr (>= 1.1.0),
matrixStats (>= 0.50.2), methods, Rcpp (>= 0.12.5), minpack.lm
(>= 1.2-0), raster (>= 2.5-2), readxl (>= 0.1.1), shape (>=
1.4.2), parallel, XML (>= 3.98-1.4), zoo (>= 1.7-13)
Suggests: RLumShiny (>= 0.1.0), RLumModel (>= 0.1.1), plotly (>=
3.4.13), rmarkdown (>= 0.9.6), rjags (>= 4-6), pander (>=
0.6.0), rstudioapi (>= 0.5)
URL: http://CRAN.R-project.org/package=Luminescence
Collate: 'Analyse_SAR.OSLdata.R' 'CW2pHMi.R' 'CW2pLM.R' 'CW2pLMi.R'
'CW2pPMi.R' 'Luminescence-package.R' 'RcppExports.R'
'replicate_RLum.R' 'RLum-class.R' 'names_RLum.R'
'structure_RLum.R' 'length_RLum.R' 'set_RLum.R' 'get_RLum.R'
'RLum.Analysis-class.R' 'RLum.Data-class.R' 'bin_RLum.Data.R'
'RLum.Data.Curve-class.R' 'RLum.Data.Image-class.R'
'RLum.Data.Spectrum-class.R' 'RLum.Results-class.R'
'Risoe.BINfileData2RLum.Analysis.R'
'Risoe.BINfileData2RLum.Data.Curve.R' 'set_Risoe.BINfileData.R'
'get_Risoe.BINfileData.R' 'RisoeBINfileData-class.R'
'Second2Gray.R' 'analyse_IRSAR.RF.R' 'analyse_SAR.CWOSL.R'
'analyse_SAR.TL.R' 'analyse_baSAR.R' 'analyse_pIRIRSequence.R'
'app_RLum.R' 'apply_CosmicRayRemoval.R'
'apply_EfficiencyCorrection.R' 'calc_AliquotSize.R'
'calc_CentralDose.R' 'calc_CommonDose.R'
'calc_CosmicDoseRate.R' 'calc_FadingCorr.R' 'calc_FastRatio.R'
'calc_FiniteMixture.R' 'calc_FuchsLang2001.R'
'calc_HomogeneityTest.R' 'calc_IEU.R' 'calc_MaxDose.R'
'calc_MinDose.R' 'calc_OSLLxTxRatio.R' 'calc_SourceDoseRate.R'
'calc_Statistics.R' 'calc_TLLxTxRatio.R'
'calc_ThermalLifetime.R' 'calc_gSGC.R'
'extract_IrradiationTimes.R' 'fit_CWCurve.R' 'fit_LMCurve.R'
'get_Layout.R' 'get_Quote.R' 'get_rightAnswer.R'
'internal_as.latex.table.R' 'internals_RLum.R'
'merge_RLum.Analysis.R' 'merge_RLum.Data.Curve.R'
'merge_RLum.R' 'merge_RLum.Results.R'
'merge_Risoe.BINfileData.R' 'methods_DRAC.R' 'methods_RLum.R'
'model_LuminescenceSignals.R' 'plot_AbanicoPlot.R'
'plot_DRTResults.R' 'plot_DetPlot.R'
'plot_FilterCombinations.R' 'plot_GrowthCurve.R'
'plot_Histogram.R' 'plot_KDE.R' 'plot_NRt.R'
'plot_RLum.Analysis.R' 'plot_RLum.Data.Curve.R'
'plot_RLum.Data.Image.R' 'plot_RLum.Data.Spectrum.R'
'plot_RLum.R' 'plot_RLum.Results.R' 'plot_RadialPlot.R'
'plot_Risoe.BINfileData.R' 'plot_ViolinPlot.R' 'read_BIN2R.R'
'read_Daybreak2R.R' 'read_SPE2R.R' 'read_XSYG2R.R'
'report_RLum.R' 'template_DRAC.R' 'tune_Data.R' 'use_DRAC.R'
'verify_SingleGrainData.R' 'write_R2BIN.R' 'zzz.R'
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-05-30 16:47:30 UTC; kreutzer
Repository: CRAN
Date/Publication: 2016-05-30 20:26:01


Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'Luminescence' ...
** package 'Luminescence' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c analyse_IRSARRF_SRS.cpp -o analyse_IRSARRF_SRS.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c create_UID.cpp -o create_UID.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o Luminescence.so RcppExports.o analyse_IRSARRF_SRS.o create_UID.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/Luminescence/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'Luminescence'
    finding HTML links ... done
    Analyse_SAR.OSLdata                     html  
    BaseDataSet.CosmicDoseRate              html  
    CW2pHMi                                 html  
    CW2pLM                                  html  
    CW2pLMi                                 html  
    CW2pPMi                                 html  
    ExampleData.BINfileData                 html  
    ExampleData.CW_OSL_Curve                html  
    ExampleData.DeValues                    html  
    ExampleData.FittingLM                   html  
    ExampleData.LxTxData                    html  
    ExampleData.LxTxOSLData                 html  
    ExampleData.RLum.Analysis               html  
    ExampleData.RLum.Data.Image             html  
    ExampleData.XSYG                        html  
    Luminescence-package                    html  
    RLum-class                              html  
    RLum.Analysis-class                     html  
    RLum.Data-class                         html  
    RLum.Data.Curve-class                   html  
    RLum.Data.Image-class                   html  
    RLum.Data.Spectrum-class                html  
    RLum.Results-class                      html  
    Risoe.BINfileData-class                 html  
    Risoe.BINfileData2RLum.Analysis         html  
    Second2Gray                             html  
    analyse_IRSAR.RF                        html  
Rd warning: /tmp/RtmpOTOLSv/R.INSTALL50572f8a4161/Luminescence/man/analyse_IRSAR.RF.Rd:90: missing file link 'language-class'
    analyse_SAR.CWOSL                       html  
    analyse_SAR.TL                          html  
    analyse_baSAR                           html  
    analyse_pIRIRSequence                   html  
    app_RLum                                html  
    apply_CosmicRayRemoval                  html  
    apply_EfficiencyCorrection              html  
Rd warning: /tmp/RtmpOTOLSv/R.INSTALL50572f8a4161/Luminescence/man/apply_EfficiencyCorrection.Rd:30: missing file link 'approx'
    as                                      html  
    bin_RLum.Data                           html  
    calc_AliquotSize                        html  
    calc_CentralDose                        html  
    calc_CommonDose                         html  
    calc_CosmicDoseRate                     html  
    calc_FadingCorr                         html  
    calc_FastRatio                          html  
    calc_FiniteMixture                      html  
    calc_FuchsLang2001                      html  
    calc_HomogeneityTest                    html  
    calc_IEU                                html  
    calc_MaxDose                            html  
    calc_MinDose                            html  
    finding level-2 HTML links ... done

    calc_OSLLxTxRatio                       html  
    calc_SourceDoseRate                     html  
    calc_Statistics                         html  
    calc_TLLxTxRatio                        html  
    calc_ThermalLifetime                    html  
Rd warning: /tmp/RtmpOTOLSv/R.INSTALL50572f8a4161/Luminescence/man/calc_ThermalLifetime.Rd:136: missing file link 'rnorm'
    calc_gSGC                               html  
    extract_IrradiationTimes                html  
    fit_CWCurve                             html  
    fit_LMCurve                             html  
    get_Layout                              html  
    get_Quote                               html  
    get_RLum                                html  
    get_Risoe.BINfileData                   html  
    get_rightAnswer                         html  
    length_RLum                             html  
    merge_RLum.Analysis                     html  
    merge_RLum.Data.Curve                   html  
Rd warning: /tmp/RtmpOTOLSv/R.INSTALL50572f8a4161/Luminescence/man/merge_RLum.Data.Curve.Rd:65: missing file link 'rowMins'
Rd warning: /tmp/RtmpOTOLSv/R.INSTALL50572f8a4161/Luminescence/man/merge_RLum.Data.Curve.Rd:70: missing file link 'rowMins'
    merge_RLum                              html  
    merge_RLum.Results                      html  
    merge_Risoe.BINfileData                 html  
    methods_RLum                            html  
    model_LuminescenceSignals               html  
    names_RLum                              html  
    plot_AbanicoPlot                        html  
    plot_DRTResults                         html  
    plot_DetPlot                            html  
    plot_FilterCombinations                 html  
    plot_GrowthCurve                        html  
    plot_Histogram                          html  
    plot_KDE                                html  
    plot_NRt                                html  
    plot_RLum.Analysis                      html  
    plot_RLum.Data.Curve                    html  
    plot_RLum.Data.Image                    html  
    plot_RLum.Data.Spectrum                 html  
    plot_RLum                               html  
    plot_RLum.Results                       html  
    plot_RadialPlot                         html  
    plot_Risoe.BINfileData                  html  
    plot_ViolinPlot                         html  
    read_BIN2R                              html  
    read_Daybreak2R                         html  
    read_SPE2R                              html  
    read_XSYG2R                             html  
    replicate_RLum                          html  
    report_RLum                             html  
    sTeve                                   html  
    set_RLum                                html  
    set_Risoe.BINfileData                   html  
    structure_RLum                          html  
    template_DRAC                           html  
    tune_Data                               html  
    use_DRAC                                html  
    verify_SingleGrainData                  html  
    write_R2BIN                             html  
** building package indices
** testing if installed package can be loaded
* DONE (Luminescence)
Making 'packages.html' ... done