Last data update: 2014.03.03
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M3D
Package: M3D
Type: Package
Title: Identifies differentially methylated regions across testing
groups
Version: 1.6.2
Date: 2015-09-17
Author: Tom Mayo
Maintainer: Tom Mayo <t.mayo@ed.ac.uk>
Description: This package identifies statistically significantly differentially
methylated regions of CpGs. It uses kernel methods (the Maximum Mean
Discrepancy) to measure differences in methylation profiles, and relates
these to inter-replicate changes, whilst accounting for variation in
coverage profiles.
License: Artistic License 2.0
Imports: BiocGenerics, S4Vectors, IRanges, GenomicRanges,
SummarizedExperiment, BiSeq, parallel
Depends: R (>= 3.0.0)
VignetteBuilder: knitr
Suggests: BiocStyle, knitr, RUnit, BiocGenerics
biocViews: DNAMethylation, DifferentialMethylation, Coverage, CpGIsland
NeedsCompilation: no
Packaged: 2016-05-16 04:45:21 UTC; biocbuild
● BiocViews: Coverage, CpGIsland, DNAMethylation, DifferentialMethylation
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1 images,
14 functions,
0 datasets
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Reverse Depends: 0
Install log
* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'M3D' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'M3D'
finding HTML links ... done
CpGsDemo html
M3D-package html
M3D_Para html
M3D_Single html
M3D_Wrapper html
MMDlistDemo html
PDemo html
determineGroupComps html
findComps html
medianFreq html
plotMethProfile html
pvals html
readENCODEdata html
rrbsDemo html
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (M3D)
Making 'packages.html' ... done
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