MAMA

Package: MAMA
Version: 2.2.1
Date: 2013-1-28
Title: Meta-Analysis of MicroArray
Author: Ivana Ihnatova <184415@mail.muni.cz>.
Maintainer: Ivana Ihnatova <184415@mail.muni.cz>
Depends: R (>= 2.15.1), methods, genefilter, metaMA, xtable, multtest,
gtools, grid, GeneMeta
Suggests: gplots, RankProd
Imports: MergeMaid, GeneMeta, xtable, methods, metaArray
Description: Implementation of methods for microarray meta-analysis.
License: GPL (>= 2)
Packaged: 2013-04-29 20:06:31 UTC; user
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-04-30 06:22:29

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'MAMA' ...
** package 'MAMA' successfully unpacked and MD5 sums checked
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'MAMA'
    finding HTML links ... done
    ColonData                               html  
    ES.GeneMeta                             html  
    MAP.Matches                             html  
    MAP.genes                               html  
    MAPmatrix                               html  
    MAPsig1                                 html  
    MAPsig2                                 html  
    MCtest                                  html  
    METRADISC                               html  
    MetaArray                               html  
    RandomScore                             html  
    RankProduct                             html  
    T.select                                html  
    VennMapper                              html  
    Z                                       html  
    clinical                                html  
    clinical.sum                            html  
    colIntersect                            html  
    commonGenes                             html  
    compute.RQ                              html  
    computeAlpha                            html  
    computeOrdering                         html  
    conting.tab                             html  
    cv.filter                               html  
    entitybuild2                            html  
    flip                                    html  
    fold.change                             html  
    gene.list                               html  
    gene.select.FC                          html  
    join.DEG                                html  
    join.results                            html  
    make.matrix                             html  
    mergeExprs2                             html  
    mergedata                               html  
    meta.test                               html  
    metaMA                                  html  
    finding level-2 HTML links ... done

    metagene                                html  
    metaheat                                html  
    metaheat2                               html  
    metalist.to.matrix                      html  
    methods                                 html  
    patternMatch                            html  
    patternMatch.strong                     html  
    patternToString                         html  
    patternmatrix                           html  
    performSOGL                             html  
    plot.SOGLresult                         html  
    plotES                                  html  
    plotQvsChi                              html  
    plotgene                                html  
    plotgene2                               html  
    plotpattern                             html  
    posterior.mean                          html  
    prelimScore                             html  
    prepareData                             html  
    preparePermutations                     html  
    probs.to.matrix                         html  
    rank.genes                              html  
    rank.genes.adv                          html  
    ratio                                   html  
    sd.filter                               html  
    selectAlpha                             html  
    selectClass                             html  
    selectGenes                             html  
    sigScore                                html  
    test.group.shuffle                      html  
    zScores                                 html  
** building package indices
** installing vignettes
   'MAMA.rnw' 
** testing if installed package can be loaded
* DONE (MAMA)
Making 'packages.html' ... done