Last data update: 2014.03.03


Package: MANOR
Version: 1.44.0
Date: 2015-05-27
Title: CGH Micro-Array NORmalization
Author: Pierre Neuvial <>, Philippe Hupe
Maintainer: Pierre Neuvial <>
Depends: R (>= 2.10), GLAD
Imports: GLAD, graphics, grDevices, stats, utils
Description: Importation, normalization, visualization, and quality
control functions to correct identified sources of variability
in array-CGH experiments.
License: GPL-2
biocViews: Microarray, TwoChannel, DataImport, QualityControl,
Preprocessing, CopyNumberVariation
NeedsCompilation: yes
Packaged: 2016-05-04 02:47:53 UTC; biocbuild

● BiocViews: CopyNumberVariation, DataImport, Microarray, Preprocessing, QualityControl, TwoChannel
10 images, 16 functions, 3 datasets
● Reverse Depends: 0

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'MANOR' ...
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c Rnem_arg.c -o Rnem_arg.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c Rnem_exe.c -o Rnem_exe.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c exememo.c -o exememo.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c nem_alg.c -o nem_alg.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c nem_hlp.c -o nem_hlp.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c nem_mod.c -o nem_mod.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c nem_nei.c -o nem_nei.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c nem_rnd.c -o nem_rnd.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c nem_ver.c -o nem_ver.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o Rnem_arg.o Rnem_exe.o exememo.o nem_alg.o nem_hlp.o nem_mod.o nem_nei.o nem_rnd.o nem_ver.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/MANOR/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'MANOR'
    finding HTML links ... done
    MANOR-internal                          html  
    arrayTrend                              html  
    detectSB                                html  
    flag.arrayCGH                           html  
    flag.summary                            html  
    flags                                   html  
    genome.plot                             html                             html  
    import                                  html  
    nem                                     html  
    norm                                    html  
    qscore                                  html  
    qscore.arrayCGH                         html  
    qscore.summary                          html  
    qscores                                 html  
    report.plot                             html  
    sort                                    html  
    spatial                                 html  
    to.flag                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
Making 'packages.html' ... done