MEET

Package: MEET
Type: Package
Title: MEET: Motif Elements Estimation Toolkit
Version: 5.1.1
Date: 2012-12-12
Author: Joan Maynou and Erola Pairo.
Maintainer: Joan Maynou <joan.maynou@upc.edu>
Description: MEET (Motif Elements Estimation Toolkit) is a R-package
that integrates a set of computational algorithms for the
detection of Transcription Factor Binding Sites (TFBS).
License: GPL (>= 2)
LazyLoad: yes
LazyDataCompression: bzip2
Depends: R (>= 2.15.0), seqinr, pcaMethods, Matrix,
ROCR, Hmisc, KernSmooth, methods, seqLogo
Packaged: 2013-02-22 14:29:54 UTC; root
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2013-02-22 16:07:16

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'MEET' ...
** package 'MEET' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c MI.c -o MI.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c PCAdetection.c -o PCAdetection.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c correctionentropy.c -o correctionentropy.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c correctionredundancy.c -o correctionredundancy.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c divergenceShannon.c -o divergenceShannon.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c entropyRenyi.c -o entropyRenyi.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c entropyShannon.c -o entropyShannon.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c entropycorrected.c -o entropycorrected.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c getListElement.c -o getListElement.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c jointprobability.c -o jointprobability.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c loopDIVERGENCE.c -o loopDIVERGENCE.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c loopENTROPY.c -o loopENTROPY.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c missingfun.c -o missingfun.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c powRenyi.c -o powRenyi.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c powX2.c -o powX2.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c probability.c -o probability.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c probabilitycouple.c -o probabilitycouple.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c readH.c -o readH.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o MEET.so MI.o PCAdetection.o correctionentropy.o correctionredundancy.o divergenceShannon.o entropyRenyi.o entropyShannon.o entropycorrected.o getListElement.o jointprobability.o loopDIVERGENCE.o loopENTROPY.o missingfun.o powRenyi.o powX2.o probability.o probabilitycouple.o readH.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/MEET/libs
** R
** data
** exec
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'MEET'
    finding HTML links ... done
    Alignment                               html  
    BackgroundOrganism                      html  
    CalculInformation                       html  
    CalculPSSM                              html  
    CalculPWM                               html  
    CalculRedundancy                        html  
    CalculScores                            html  
    CalculSimilarity                        html  
    ConstructModel                          html  
    CreateConsensus                         html  
    DivergenceDROSOPHILA                    html  
    DivergenceHOMO                          html  
    DivergenceMUS                           html  
    DivergenceRATTUS                        html  
    EntropyDROSOPHILA                       html  
    EntropyHOMO                             html  
    EntropyMUS                              html  
    EntropyRATTUS                           html  
    Hmemory                                 html  
    Hread                                   html  
    JacksonParameters                       html  
    MEET                                    html  
    MImemory                                html  
    MIread                                  html  
    Model                                   html  
    ModelDivergence                         html  
    ModelEntropy                            html  
    ModelMATCH                              html  
    ModelMDscan                             html  
    ModelMEME                               html  
    ModelPCA                                html  
    Models                                  html  
    ModeltransMEME                          html  
    PCanalysis                              html  
    PredictDivergence                       html  
    PredictEntropy                          html  
    PredictMATCH                            html  
    PredictMDscan                           html  
    PredictMEME                             html  
    PredictPCA                              html  
    Prediction                              html  
    PredicttransMEME                        html  
    Prob                                    html  
    QresidualsDROSOPHILA                    html  
    QresidualsHOMO                          html  
    QresidualsMUS                           html  
    QresidualsRATTUS                        html  
    QtoJackson                              html  
    ROCmodel                                html  
    Read.aligned                            html  
    ReadSequence                            html  
    Sequence                                html  
    TFlogodds                               html  
    TranscriptionFactor                     html  
    align.MEME                              html  
    align.clustalw                          html  
    align.muscle                            html  
    chooseModel                             html  
    classMODEL                              html  
    correction                              html  
    correction.entropy                      html  
    correction.redundancy                   html  
    correctionaprox                         html  
    detection                               html  
    detector_1rOrdre_diff                   html  
    detector_2nOrdre                        html  
    detector_2nOrdre_init                   html  
    diffInstructions                        html  
    divergence.Renyi                        html  
    divergence.Shannon                      html  
    entropy.Renyi                           html  
    entropy.Shannon                         html  
    entropy.corrected                       html  
    entropy.joint                           html  
    iicc                                    html  
    joint.probability                       html  
    kfold.Divergence                        html  
    kfold.Entropy                           html  
    kfold.MATCH                             html  
    kfold.MDscan                            html  
    kfold.MEME                              html  
    kfold.PCA                               html  
    kfold.transMEME                         html  
    motif.mast                              html  
    numericalDNA                            html  
    organism                                html  
    probability                             html  
    probability.couple                      html  
    pvalue                                  html  
    q                                       html  
    read.mast                               html  
    readMEME                                html  
    redundancy                              html  
    run.read.MDscan                         html  
    scoreMDscan                             html  
    standardout                             html  
    writeMEME                               html  
    writeResultsHTML                        html  
** building package indices
** testing if installed package can be loaded
* DONE (MEET)
Making 'packages.html' ... done