MRIaggr

Package: MRIaggr
Type: Package
Title: Management, Display, and Processing of Medical Imaging Data
Version: 1.1.5
Date: 2015-12-22
Author: Brice Ozenne
Maintainer: Brice Ozenne <brice.ozenne@orange.fr>
Description: Provide a compact storage for medical imaging data with access and display possibilities. Basic tools for processing brain imaging data are proposed like extraction of brain voxels, morphological image segmentation, and filtering / normalization of contrast parameters. Specific tools are also provided for blood perfusion imaging to calculate hypoperfusion and reperfusion volumes.
License: GPL-3
Depends: R (>= 2.10), Rcpp
Imports: graphics, grDevices, Matrix, methods, oro.dicom, oro.nifti,
RANN, ROCR, spam, stats, stats4, utils
Suggests: coda, fields, mritc, nnet, parallel, pracma, rgl, snowfall
LazyLoad: yes
LinkingTo: Rcpp, RcppArmadillo, RcppProgress
Collate: 'Generic_Functions.R' 'RcppExports.R' 'Functions_Valid.R'
'Functions_Miscellaneous.R' 'Functions_Options.R'
'Functions_GR.R' 'Functions_Potts.R'
'Functions_AssociatedClass.R' 'Class_MRIaggr.R'
'Class_Carto3D.R'
Packaged: 2015-12-23 18:38:03 UTC; brice
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-12-23 23:44:19

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'MRIaggr' ...
** package 'MRIaggr' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppProgress/include"   -fpic  -g -O2  -c Functions_Filtering.cpp -o Functions_Filtering.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppProgress/include"   -fpic  -g -O2  -c Functions_Hemisphere.cpp -o Functions_Hemisphere.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppProgress/include"   -fpic  -g -O2  -c Functions_Potential.cpp -o Functions_Potential.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppProgress/include"   -fpic  -g -O2  -c Functions_Potts.cpp -o Functions_Potts.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppProgress/include"   -fpic  -g -O2  -c Functions_W.cpp -o Functions_W.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppProgress/include"   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o MRIaggr.so Functions_Filtering.o Functions_Hemisphere.o Functions_Potential.o Functions_Potts.o Functions_W.o RcppExports.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/MRIaggr/libs
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'MRIaggr'
    finding HTML links ... done
    Carto3D-class                           html  
    Carto3D-constCarto3D                    html  
    Data-MRIaggr.Pat1_red                   html  
    GRalgo-GRalgo                           html  
    GRalgo-calcCriteriaGR                   html  
    GRalgo-calcGR                           html  
    GRalgo-calcSigmaGR                      html  
    GRalgo-initGR                           html  
    GRalgo-plotSigmaGR                      html  
    MRIaggr-Carto3D2MRIaggr                 html  
    MRIaggr-allocClinic                     html  
    MRIaggr-allocContrast                   html  
    MRIaggr-allocDescStats                  html  
    MRIaggr-allocHemisphere                 html  
    MRIaggr-allocNormalization              html  
    MRIaggr-allocTable                      html  
    MRIaggr-allocW                          html  
    MRIaggr-array2df                        html  
    MRIaggr-boxplotMask                     html  
    MRIaggr-calcBlockW                      html  
    MRIaggr-calcBlockW_cpp                  html  
    MRIaggr-calcBrainMask                   html  
    MRIaggr-calcContro_cpp                  html  
    MRIaggr-calcControlateral               html  
    MRIaggr-calcDistMask                    html  
    MRIaggr-calcDistTissues                 html  
    MRIaggr-calcFilter                      html  
    MRIaggr-calcGroupsCoords                html  
    MRIaggr-calcGroupsCoords_cpp            html  
    MRIaggr-calcGroupsMask                  html  
    MRIaggr-calcGroupsW                     html  
    MRIaggr-calcGroupsW_cpp                 html  
    MRIaggr-calcHemi_cpp                    html  
    MRIaggr-calcHemisphere                  html  
    MRIaggr-calcNormalization               html  
    MRIaggr-calcROCthreshold                html  
    MRIaggr-calcRegionaContrast             html  
    MRIaggr-calcSmoothMask                  html  
    MRIaggr-calcTableHypoReperf             html  
    MRIaggr-calcTableLesion                 html  
    MRIaggr-calcThresholdMRIaggr            html  
    MRIaggr-calcTissueType                  html  
    MRIaggr-calcW                           html  
    MRIaggr-class                           html  
    MRIaggr-constCompressMRIaggr            html  
    MRIaggr-constMRIaggr                    html  
    MRIaggr-constReduceMRIaggr              html  
    MRIaggr-df2array                        html  
    MRIaggr-filtrage2D_cpp                  html  
    MRIaggr-filtrage2Dmed_cpp               html  
    MRIaggr-filtrage3D_cpp                  html  
    MRIaggr-filtrage3Dmed_cpp               html  
    MRIaggr-heatmapMRIaggr                  html  
    MRIaggr-initCol                         html  
    MRIaggr-initDisplayWindow               html  
    MRIaggr-initFilter                      html  
    MRIaggr-initIndex                       html  
    MRIaggr-initMask                        html  
    MRIaggr-initNeighborhood                html  
    MRIaggr-initNum                         html  
    MRIaggr-initParameter                   html  
    MRIaggr-initWindow                      html  
    MRIaggr-legendMRI                       html  
    MRIaggr-multiplot                       html  
    MRIaggr-outline                         html  
    MRIaggr-outlineMRIaggr                  html  
    MRIaggr-plotDistClass                   html  
    MRIaggr-plotLesion3D                    html  
    MRIaggr-plotMRI                         html  
    MRIaggr-plotOutline                     html  
    MRIaggr-plotTableLesion                 html  
    MRIaggr-pointsHemisphere                html  
    MRIaggr-readMRI                         html  
    MRIaggr-selectClinic                    html  
    MRIaggr-selectContrast                  html  
    MRIaggr-selectCoords                    html  
    MRIaggr-selectDefault_value             html  
    MRIaggr-selectDescStats                 html  
    MRIaggr-selectHemispheres               html  
    MRIaggr-selectHistory                   html  
    MRIaggr-selectIdentifier                html  
    MRIaggr-selectMidplane                  html  
    MRIaggr-selectN                         html  
    MRIaggr-selectNormalization             html  
    MRIaggr-selectParameter                 html  
    MRIaggr-selectTable                     html  
    MRIaggr-selectVoxelDim                  html  
    MRIaggr-selectVoxelSize                 html  
    MRIaggr-selectW                         html  
    MRIaggr-summary.MRIaggr                 html  
    MRIaggr-supprContrast                   html  
    MRIaggr-supprDescStats                  html  
    MRIaggr-writeMRI                        html  
    MRIaggr-writeMRIaggr                    html  
    Miscellaneous-EDK                       html  
    Miscellaneous-calcAUPRC                 html  
    Miscellaneous-constLatex                html  
    Miscellaneous-dtnorm                    html  
    Miscellaneous-initConstLatex            html  
    Miscellaneous-logit                     html  
    Miscellaneous-valid                     html  
    Package-MRIaggr                         html  
    options-allocOptionsMRIaggr             html  
    options-optionsMRIaggr                  html  
    options-selectOptionsMRIaggr            html  
    sfMM-calcMultiPotential                 html  
    sfMM-calcMultiPotential_cpp             html  
    sfMM-calcPotts                          html  
    sfMM-calcPottsParameter                 html  
    sfMM-calcPotts_cpp                      html  
    sfMM-calcRadius_cpp                     html  
    sfMM-rhoLvfree                          html  
    sfMM-rhoMF                              html  
    sfMM-simulPotts                         html  
    sfMM-simulPottsFast_cpp                 html  
    sfMM-simulPotts_cpp                     html  
** building package indices
** testing if installed package can be loaded
* DONE (MRIaggr)
Making 'packages.html' ... done