MethPed

Package: MethPed
Type: Package
Version: 1.0.2
Date: 2016-01-01
Title: A DNA methylation classifier tool for the identification of
pediatric brain tumor subtypes
Authors@R: c( person(given = "Mohammad Tanvir", family = "Ahamed", role
= c("aut","trl")), person(given = "Anna", family =
"Danielsson", role = "aut"), person(given = "Szilárd", family =
"Nemes", role = c("aut","trl")), person(given = "Helena",
family = "Carén", role = c("aut","cre","cph"),email =
"helenacarenlab@gmail.com"))
Depends: R (>= 3.0.0), Biobase
Suggests: BiocStyle, knitr, markdown, impute
Imports: randomForest, grDevices, graphics, stats
VignetteBuilder: knitr
biocViews: DNAMethylation, Classification, Epigenetics
Encoding: UTF-8
Description: Classification of pediatric tumors into biologically
defined subtypes is challenging and multifaceted approaches are
needed. For this aim, we developed a diagnostic classifier
based on DNA methylation profiles. We offer MethPed as an
easy-to-use toolbox that allows researchers and clinical
diagnosticians to test single samples as well as large cohorts
for subclass prediction of pediatric brain tumors. The current
version of MethPed can classify the following tumor
diagnoses/subgroups: Diffuse Intrinsic Pontine Glioma (DIPG),
Ependymoma, Embryonal tumors with multilayered rosettes (ETMR),
Glioblastoma (GBM), Medulloblastoma (MB) - Group 3 (MB_Gr3),
Group 4 (MB_Gr3), Group WNT (MB_WNT), Group SHH (MB_SHH) and
Pilocytic Astrocytoma (PiloAstro).
License: GPL-2
RoxygenNote: 5.0.1
NeedsCompilation: no
Author: Mohammad Tanvir Ahamed [aut, trl], Anna Danielsson [aut],
Szilárd Nemes [aut, trl], Helena Carén [aut, cre, cph]
Maintainer: Helena Carén <helenacarenlab@gmail.com>
Packaged: 2016-05-16 06:01:31 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'MethPed' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'MethPed'
    finding HTML links ... done
    MethPed                                 html  
    MethPed_900probes                       html  
    MethPed_sample                          html  
    checkNA                                 html  
    plot.methped                            html  
    probeMis                                html  
    summary.methped                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (MethPed)
Making 'packages.html' ... done