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Last data update: 2014.03.03

MethTargetedNGS

Package: MethTargetedNGS
Type: Package
Title: Perform Methylation Analysis on Next Generation Sequencing Data
Version: 1.4.0
Date: 2015-02-06
Depends: R (>= 3.1.2), stringr, seqinr, gplots, Biostrings
SystemRequirements: HMMER3
Author: Muhammad Ahmer Jamil with Contribution of Prof. Holger Frohlich
and Priv.-Doz. Dr. Osman El-Maarri
Maintainer: Muhammad Ahmer Jamil <engr.ahmerjamil@gmail.com>
Description: Perform step by step methylation analysis of Next
Generation Sequencing data.
License: Artistic-2.0
biocViews: ResearchField, Genetics, Sequencing, Alignment,
SequenceMatching, DataImport
NeedsCompilation: no
Packaged: 2016-05-04 06:16:23 UTC; biocbuild

● BiocViews: Alignment, DataImport, Genetics, ResearchField, SequenceMatching, Sequencing
● 6 images, 11 functions, 0 datasets
● Reverse Depends: 0

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'MethTargetedNGS' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'MethTargetedNGS'
    finding HTML links ... done
    MethTargetedNGS-package                 html  
    bconv                                   html  
    compare_samples                         html  
    fishertest_cpg                          html  
    hmmbuild                                html  
    methAlign                               html  
    methAvg                                 html  
    methEntropy                             html  
    methHeatmap                             html  
    nhmmer                                  html  
    odd_ratio                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (MethTargetedNGS)
Making 'packages.html' ... done