MethylMix

Package: MethylMix
Version: 1.6.0
Date: 2014-08-25
Type: Package
Title: MethylMix: Identifying methylation driven cancer genes.
Author: Olivier Gevaert
Maintainer: Olivier Gevaert <olivier.gevaert@gmail.com>
Description: MethylMix is an algorithm implemented to identify hyper
and hypomethylated genes for a disease. MethylMix is based on a
beta mixture model to identify methylation states and compares
them with the normal DNA methylation state. MethylMix uses a
novel statistic, the Differential Methylation value or DM-value
defined as the difference of a methylation state with the
normal methylation state. Finally, matched gene expression data
is used to identify, besides differential, functional
methylation states by focusing on methylation changes that
effect gene expression.
License: GPL-2
LazyLoad: yes
Depends: R (>= 3.1.1)
Imports: foreach, parallel, doParallel, RColorBrewer, optimx, RPMM
biocViews:
DNAMethylation,StatisticalMethod,DifferentialMethylation,GeneRegulation,GeneExpression,MethylationArray,
DifferentialExpression, Pathways, Network
Suggests: BiocStyle
NeedsCompilation: no
Packaged: 2016-05-04 05:43:20 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'MethylMix' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'MethylMix'
    finding HTML links ... done
    MAcancer                                html  
    MAcancer_CDH1                           html  
    METcancer                               html  
    METcancer_CDH1                          html  
    METnormal                               html  
    METnormal_CDH1                          html  
    MethylMix                               html  
    MethylMix_PlotModel                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (MethylMix)
Making 'packages.html' ... done