MethylSeekR

Package: MethylSeekR
Type: Package
Title: Segmentation of Bis-seq data
Version: 1.12.0
Date: 2014-7-1
Author: Lukas Burger, Dimos Gaidatzis, Dirk Schubeler and Michael
Stadler
Maintainer: Lukas Burger <Lukas.Burger@fmi.ch>
Description: This is a package for the discovery of regulatory regions
from Bis-seq data
Depends: rtracklayer (>= 1.16.3), parallel (>= 2.15.1), mhsmm (>=
0.4.4)
Imports: IRanges (>= 1.16.3), BSgenome (>= 1.26.1), GenomicRanges (>=
1.10.5), geneplotter (>= 1.34.0), graphics (>= 2.15.2),
grDevices (>= 2.15.2), parallel (>= 2.15.2), stats (>= 2.15.2),
utils (>= 2.15.2)
Suggests: BSgenome.Hsapiens.UCSC.hg18
License: GPL (>=2)
biocViews: Sequencing, MethylSeq, DNAMethylation
NeedsCompilation: no
Packaged: 2016-05-04 04:51:59 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'MethylSeekR' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'MethylSeekR'
    finding HTML links ... done
    MethylSeekR-package                     html  
    calculateFDRs                           html  
    plotAlphaDistributionOneChr             html  
    plotFinalSegmentation                   html  
    plotPMDSegmentation                     html  
    readMethylome                           html  
    readSNPTable                            html  
    removeSNPs                              html  
    savePMDSegments                         html  
    saveUMRLMRSegments                      html  
    segmentPMDs                             html  
    segmentUMRsLMRs                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (MethylSeekR)
Making 'packages.html' ... done