MiSPU

Package: MiSPU
Type: Package
Title: Microbiome Based Sum of Powered Score (MiSPU) Tests
Version: 1.0
Date: 2016-02-29
Author: Chong Wu, Wei Pan
Maintainer: Chong Wu <wuxx0845@umn.edu>
Description: There is an increasing interest in investigating how the compositions of microbial communities are associated with human health and disease. In this package, we present a novel global testing method called aMiSPU, that is highly adaptive and thus high powered across various scenarios, alleviating the issue with the choice of a phylogenetic distance. Our simulations and real data analysis demonstrated that aMiSPU test was often more powerful than several competing methods while correctly controlling type I error rates.
License: GPL-2
Imports: Rcpp (>= 0.12.1)
Depends: R (>= 3.2.3), vegan, ape, aSPU, cluster
Suggests: ade4
LinkingTo: Rcpp, RcppArmadillo
NeedsCompilation: yes
Packaged: 2016-03-17 18:15:15 UTC; chong
Repository: CRAN
Date/Publication: 2016-03-18 00:08:39

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'MiSPU' ...
** package 'MiSPU' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c MiSPU.cpp -o MiSPU.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o MiSPU.so MiSPU.o RcppExports.o -L/home/ddbj/local/lib64/R/lib -lRlapack -L/home/ddbj/local/lib64/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/MiSPU/libs
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'MiSPU'
    finding HTML links ... done
    Dirichlet                               html  
    GUniFrac                                html  
    MiSPU-package                           html  
    MiSPU                                   html  
    correspLeaves                           html  
    dd                                      html  
    ranking                                 html  
    simulateData                            html  
    throat.meta                             html  
    throat.otu.tab                          html  
    throat.tree                             html  
** building package indices
** testing if installed package can be loaded
* DONE (MiSPU)
Making 'packages.html' ... done