Last data update: 2014.03.03

MmPalateMiRNA

Package: MmPalateMiRNA
Type: Package
Title: Murine Palate miRNA Expression Analysis
Version: 1.22.0
Date: 2012-11-06
Author: Guy Brock <guy.brock@louisville.edu>, Partha Mukhopadhyay
<p0mukh01@louisville.edu>, Vasyl Pihur
<vasyl.pihur@louisville.edu>, Robert M. Greene
<Dr.Bob.Greene@gmail.com>, and M. Michele Pisano
<mmpisa01@louisville.edu>
Maintainer: Guy Brock <guy.brock@louisville.edu>
Depends: R (>= 2.13.0), methods, Biobase, xtable, limma, statmod,
lattice, vsn
Imports: limma, lattice, Biobase
Suggests: GOstats, graph, Category, org.Mm.eg.db, microRNA,
targetscan.Mm.eg.db, RSQLite, DBI, AnnotationDbi, clValid,
class, cluster, multtest, RColorBrewer, latticeExtra
Description: R package compendium for the analysis of murine palate
miRNA two-color expression data.
License: GPL-3
LazyLoad: yes
Collate: MmPalateMiRNA-Methods.R MmPalateMiRNA-functions.R
Packaged: 2016-05-04 04:17:31 UTC; biocbuild
biocViews: Microarray, TwoChannel, QualityControl, Preprocessing,
DifferentialExpression, MultipleComparison, Clustering, GO,
Pathways, ReportWriting, SequenceMatching
NeedsCompilation: no

● BiocViews: Clustering, DifferentialExpression, GO, Microarray, MultipleComparison, Pathways, Preprocessing, QualityControl, ReportWriting, SequenceMatching, TwoChannel
● 5 images, 12 functions, 1 datasets
● Reverse Depends: 0

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'MmPalateMiRNA' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'MmPalateMiRNA'
    finding HTML links ... done
    MADvsMedianPlot                         html  
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/MADvsMedianPlot.Rd:29: missing file link 'MAList-class'
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/MADvsMedianPlot.Rd:30: missing file link 'NChannelSet-class'
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/MADvsMedianPlot.Rd:36: missing file link 'RGList-class'
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/MADvsMedianPlot.Rd:40: missing file link 'densityplot'
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/MADvsMedianPlot.Rd:49: missing file link 'MAList-class'
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/MADvsMedianPlot.Rd:50: missing file link 'NChannelSet-class'
    MAplot                                  html  
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/MAplot.Rd:29: missing file link 'MAList-class'
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/MAplot.Rd:30: missing file link 'NChannelSet-class'
    MmPalateMiRNA-package                   html  
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:29: missing file link 'RGList-class'
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:33: missing file link 'RGList-class'
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:34: missing file link 'MAList-class'
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:35: missing file link 'NChannelSet-class'
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:36: missing file link 'lattice-package'
    PalateData                              html  
    finding level-2 HTML links ... done

    checkMVs                                html  
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/checkMVs.Rd:9: missing file link 'RGList-class'
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/checkMVs.Rd:13: missing file link 'RGList-class'
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/checkMVs.Rd:22: missing file link 'RGList-class'
    checkOutliers                           html  
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/checkOutliers.Rd:8: missing file link 'RGList-class'
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/checkOutliers.Rd:13: missing file link 'RGList-class'
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/checkOutliers.Rd:23: missing file link 'RGList-class'
    clustPlot                               html  
    densityplot                             html  
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/densityplot.Rd:32: missing file link 'RGList-class'
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/densityplot.Rd:33: missing file link 'MAList-class'
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/densityplot.Rd:34: missing file link 'NChannelSet-class'
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/densityplot.Rd:40: missing file link 'RGList-class'
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/densityplot.Rd:44: missing file link 'densityplot'
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/densityplot.Rd:51: missing file link 'RGList-class'
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/densityplot.Rd:60: missing file link 'MAList-class'
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/densityplot.Rd:61: missing file link 'NChannelSet-class'
    filterArray                             html  
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/filterArray.Rd:8: missing file link 'RGList-class'
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/filterArray.Rd:12: missing file link 'RGList-class'
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/filterArray.Rd:26: missing file link 'RGList-class'
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/filterArray.Rd:57: missing file link 'RGList-class'
    fixMVs                                  html  
    fixOutliers                             html  
    imputeKNN                               html  
    levelplot                               html  
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/levelplot.Rd:37: missing file link 'RGList-class'
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/levelplot.Rd:38: missing file link 'MAList-class'
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/levelplot.Rd:39: missing file link 'NChannelSet-class'
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/levelplot.Rd:45: missing file link 'RGList-class'
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/levelplot.Rd:59: missing file link 'RGList-class'
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/levelplot.Rd:68: missing file link 'MAList-class'
Rd warning: /tmp/Rtmp3CwqmE/R.INSTALL658c675de9/MmPalateMiRNA/man/levelplot.Rd:69: missing file link 'NChannelSet-class'
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (MmPalateMiRNA)
Making 'packages.html' ... done

Created & Maintained by Osamu Ogasawara (osamu.ogasawara@gmail.com) and IMSBIO