MonoPhy

Package: MonoPhy
Type: Package
Title: Allows to Explore Monophyly (or Lack of it) of Taxonomic Groups
in a Phylogeny
Version: 1.1
Date: 2016-03-08
Author: Orlando Schwery
Maintainer: Orlando Schwery <oschwery@vols.utk.edu>
Depends: ape, phytools, phangorn, RColorBrewer, taxize
Description: Requires rooted resolved phylogeny as input and creates a table of genera, their monophyly-status, which taxa cause problems in monophyly etc. Different information can be extracted from the output and a plot function allows visualization of the results in a number of ways.
License: GPL-3
Suggests: knitr, testthat, spacodiR, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-03-10 23:45:11 UTC; orlandoschwery
Repository: CRAN
Date/Publication: 2016-03-11 10:27:40

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'MonoPhy' ...
** package 'MonoPhy' successfully unpacked and MD5 sums checked
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'MonoPhy'
    finding HTML links ... done
    AssessMonophyly                         html  
Rd warning: /tmp/RtmpbYei8x/R.INSTALL24f23bb11813/MonoPhy/man/AssessMonophyly.Rd:47: missing file link 'getMRCA'
    GetAncNodes                             html  
    GetIntruderTaxa                         html  
    GetResultMonophyly                      html  
    MonoPhy-package                         html  
    MonophylyData                           html  
    PlotMonophyly                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (MonoPhy)
Making 'packages.html' ... done