NHMM

Package: NHMM
Type: Package
Title: Bayesian NHMM Modeling (Multiple Time Series)
Version: 3.5
Date: 2014-08-15
Author: Tracy Holsclaw
Acknowledgements: This work was supported by a grant from the U.S.
Department of Energy, (through the Earth System Models (EaSM)
program.( This package was developed under the direction of
Padhraic Smyth at the Department of Computer Science and
Statistics at the University of California, Irvine and in
collaboration with Andrew Robertson and Arthur Greene of the
International Research Institute for Climate and Society at The
Earth Institute at Columbia University.
Maintainer: Tracy Holsclaw <iamrandom@iamrandom.com>
Description: Bayesian NHMM modeling for multiple time series. The emission distribution can be mixtures of Gammas, Poissons, Normals and zero inflation is possible.
License: GPL (>= 3)
Imports: Rcpp (>= 0.11.0)
LinkingTo: Rcpp
Depends: BayesLogit, msm, MCMCpack, MASS
URL: http://iamrandom.com/nhmm-package
Packaged: 2014-11-25 23:46:41 UTC; iamrandom
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-11-26 08:06:49

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'NHMM' ...
** package 'NHMM' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c Crtnorm.cpp -o Crtnorm.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c rcpp_3d.cpp -o rcpp_3d.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c rcpp_arraytomat.cpp -o rcpp_arraytomat.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c rcpp_dgamma.cpp -o rcpp_dgamma.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c rcpp_dmvnorm.cpp -o rcpp_dmvnorm.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c rcpp_dnorm.cpp -o rcpp_dnorm.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c rcpp_dot.cpp -o rcpp_dot.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c rcpp_dpois.cpp -o rcpp_dpois.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c rcpp_getNQQ.cpp -o rcpp_getNQQ.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c rcpp_getQQ.cpp -o rcpp_getQQ.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c rcpp_getWbin.cpp -o rcpp_getWbin.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c rcpp_getdenzity.cpp -o rcpp_getdenzity.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c rcpp_getdenzityMVN.cpp -o rcpp_getdenzityMVN.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c rcpp_getppp.cpp -o rcpp_getppp.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c rcpp_getsumz1.cpp -o rcpp_getsumz1.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c rcpp_getsumz2.cpp -o rcpp_getsumz2.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c rcpp_getvvv.cpp -o rcpp_getvvv.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c rcpp_getymiss.cpp -o rcpp_getymiss.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c rcpp_getz.cpp -o rcpp_getz.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c rcpp_prnorm.cpp -o rcpp_prnorm.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c rcpp_prod.cpp -o rcpp_prod.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c rcpp_rdirichlet.cpp -o rcpp_rdirichlet.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c rcpp_rdmix0.cpp -o rcpp_rdmix0.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c rcpp_resetX.cpp -o rcpp_resetX.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c rcpp_rgamma.cpp -o rcpp_rgamma.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c rcpp_rmultinom.cpp -o rcpp_rmultinom.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c rcpp_rnorm.cpp -o rcpp_rnorm.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c rcpp_rpois.cpp -o rcpp_rpois.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c rcpp_summ.cpp -o rcpp_summ.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c rcpp_sumv.cpp -o rcpp_sumv.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o NHMM.so Crtnorm.o RcppExports.o rcpp_3d.o rcpp_arraytomat.o rcpp_dgamma.o rcpp_dmvnorm.o rcpp_dnorm.o rcpp_dot.o rcpp_dpois.o rcpp_getNQQ.o rcpp_getQQ.o rcpp_getWbin.o rcpp_getdenzity.o rcpp_getdenzityMVN.o rcpp_getppp.o rcpp_getsumz1.o rcpp_getsumz2.o rcpp_getvvv.o rcpp_getymiss.o rcpp_getz.o rcpp_prnorm.o rcpp_prod.o rcpp_rdirichlet.o rcpp_rdmix0.o rcpp_resetX.o rcpp_rgamma.o rcpp_rmultinom.o rcpp_rnorm.o rcpp_rpois.o rcpp_summ.o rcpp_sumv.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/NHMM/libs
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'NHMM'
    finding HTML links ... done
    HMM                                     html  
    NHMM                                    html  
    NHMM_MVN                                html  
    OBIC                                    html  
    OQQ                                     html  
    OWcoef                                  html  
    OXcoef                                  html  
    Oemparams                               html  
    Oz                                      html  
    simdata                                 html  
** building package indices
** testing if installed package can be loaded
* DONE (NHMM)
Making 'packages.html' ... done