OmicKriging

Package: OmicKriging
Type: Package
Title: Poly-Omic Prediction of Complex TRaits
Version: 1.4.0
Date: 2016-03-03
Author: Hae Kyung Im, Heather E. Wheeler, Keston Aquino Michaels, Vassily
Trubetskoy
Maintainer: Hae Kyung Im <haky@uchicago.edu>
Description: It provides functions to generate a correlation matrix
from a genetic dataset and to use this matrix to predict the phenotype of an
individual by using the phenotypes of the remaining individuals through
kriging. Kriging is a geostatistical method for optimal prediction or best
unbiased linear prediction. It consists of predicting the value of a
variable at an unobserved location as a weighted sum of the variable at
observed locations. Intuitively, it works as a reverse linear regression:
instead of computing correlation (univariate regression coefficients are
simply scaled correlation) between a dependent variable Y and independent
variables X, it uses known correlation between X and Y to predict Y.
License: GPL (>= 3)
Depends: R (>= 2.15.1), doParallel
Imports: ROCR, irlba, parallel, foreach
Collate: 'correlation_matrices.R' 'input_pheno_GT.R' 'omic_KRIGR.R'
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-03-07 16:26:39 UTC; haky
Repository: CRAN
Date/Publication: 2016-03-08 00:12:43

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'OmicKriging' ...
** package 'OmicKriging' successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'OmicKriging'
    finding HTML links ... done
    krigr_cross_validation                  html  
    load_sample_data                        html  
    make_GXM                                html  
    make_PCs_irlba                          html  
    make_PCs_svd                            html  
    okriging                                html  
    read_GRMBin                             html  
    write_GRMBin                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (OmicKriging)
Making 'packages.html' ... done