OncoScore

Package: OncoScore
Version: 1.0.0
Date: 2016-03-16
Title: A tool to identify potentially oncogenic genes
Authors@R: c(person("Daniele", "Ramazzotti", role=c("aut", "cre"),
email="daniele.ramazzotti@yahoo.com"), person("Luca", "De
Sano", role=c("aut"), email="l.desano@campus.unimib.it"),
person("Roberta", "Spinelli", role=c("ctb"),
email="spinelli.roberta@gmail.com"), person("Carlo",
"Gambacorti Passerini", role=c("ctb"),
email="carlo.gambacorti@unimib.it"), person("Rocco", "Piazza",
role=c("ctb"), email="rocco.piazza@unimib.it"))
Maintainer: Daniele Ramazzotti <daniele.ramazzotti@yahoo.com>
Depends: R (>= 3.3),
Imports: biomaRt, grDevices, graphics, utils,
Suggests: BiocGenerics, BiocStyle, testthat,
Description: OncoScore is a tool to measure the association of genes to
cancer based on citation frequency in biomedical literature.
The score is evaluated from PubMed literature by dynamically
updatable web queries.
Encoding: UTF-8
LazyData: TRUE
License: GPL-3
URL: https://github.com/danro9685/OncoScore
BugReports: https://github.com/danro9685/OncoScore
biocViews: BiomedicalInformatics
RoxygenNote: 5.0.1
NeedsCompilation: no
Author: Daniele Ramazzotti [aut, cre], Luca De Sano [aut], Roberta
Spinelli [ctb], Carlo Gambacorti Passerini [ctb], Rocco Piazza
[ctb]
Packaged: 2016-05-05 05:49:25 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'OncoScore' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'OncoScore'
    finding HTML links ... done
    compute.frequencies.scores              html  
    compute.oncoscore                       html  
    compute.oncoscore.from.region           html  
    compute.oncoscore.timeseries            html  
    estimate.oncogenes                      html  
    genes                                   html  
    get.genes.from.biomart                  html  
    get.list.from.xml                       html  
    get.pubmed.driver.analysis              html  
    perform.query                           html  
    perform.query.timeseries                html  
    plot.oncoscore                          html  
    plot.oncoscore.timeseries               html  
    query                                   html  
    query.timepoints                        html  
    timepoints                              html  
    try.scan                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (OncoScore)
Making 'packages.html' ... done