PANR

Package: PANR
Type: Package
Title: Posterior association networks and functional modules inferred
from rich phenotypes of gene perturbations
Version: 1.18.0
Date: 2012-06-20
Author: Xin Wang <xin_wang@hms.harvard.edu>
Maintainer: Xin Wang <xin_wang@hms.harvard.edu>
Imports: graphics, grDevices, MASS, methods, pvclust, stats, utils,
RedeR
Depends: R (>= 2.14), igraph
Suggests: snow
Description: This package provides S4 classes and methods for inferring
functional gene networks with edges encoding posterior beliefs
of gene association types and nodes encoding perturbation
effects.
License: Artistic-2.0
Collate: classUnions.R assoScore.R panGraphics.R AllGenerics.R
AllClasses.R BetaMixture-methods.R PAN-methods.R
LazyLoad: yes
biocViews: NetworkInference, Visualization, GraphAndNetwork,
Clustering, CellBasedAssays
NeedsCompilation: no
Packaged: 2016-05-04 04:11:28 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'PANR' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'PANR'
    finding HTML links ... done
    BetaMixture-class                       html  
    PAN-class                               html  
Rd warning: /tmp/RtmpiM2ylD/R.INSTALL74b2c538f74/PANR/man/PAN-class.Rd:21: missing file link 'BetaMixture'
Rd warning: /tmp/RtmpiM2ylD/R.INSTALL74b2c538f74/PANR/man/PAN-class.Rd:85: missing file link 'igraph'
Rd warning: /tmp/RtmpiM2ylD/R.INSTALL74b2c538f74/PANR/man/PAN-class.Rd:85: missing file link 'RedeR'
Rd warning: /tmp/RtmpiM2ylD/R.INSTALL74b2c538f74/PANR/man/PAN-class.Rd:89: missing file link 'igraph'
Rd warning: /tmp/RtmpiM2ylD/R.INSTALL74b2c538f74/PANR/man/PAN-class.Rd:89: missing file link 'RedeR'
    SNR2p                                   html  
    assoScore                               html  
    buildPAN                                html  
Rd warning: /tmp/RtmpiM2ylD/R.INSTALL74b2c538f74/PANR/man/buildPAN.Rd:9: missing file link 'igraph'
Rd warning: /tmp/RtmpiM2ylD/R.INSTALL74b2c538f74/PANR/man/buildPAN.Rd:9: missing file link 'RedeR'
Rd warning: /tmp/RtmpiM2ylD/R.INSTALL74b2c538f74/PANR/man/buildPAN.Rd:40: missing file link 'BetaMixture'
Rd warning: /tmp/RtmpiM2ylD/R.INSTALL74b2c538f74/PANR/man/buildPAN.Rd:44: missing file link 'BetaMixture'
    cosineSim                               html  
    data-Bakal2007                          html  
Rd warning: /tmp/RtmpiM2ylD/R.INSTALL74b2c538f74/PANR/man/data-Bakal2007.Rd:29: missing file link 'BetaMixture'
    edgeWeight                              html  
    exportPAN                               html  
Rd warning: /tmp/RtmpiM2ylD/R.INSTALL74b2c538f74/PANR/man/exportPAN.Rd:8: missing file link 'write.graph'
Rd warning: /tmp/RtmpiM2ylD/R.INSTALL74b2c538f74/PANR/man/exportPAN.Rd:8: missing file link 'igraph'
Rd warning: /tmp/RtmpiM2ylD/R.INSTALL74b2c538f74/PANR/man/exportPAN.Rd:31: missing file link 'write.graph'
    fitBM                                   html  
Rd warning: /tmp/RtmpiM2ylD/R.INSTALL74b2c538f74/PANR/man/fitBM.Rd:40: missing file link 'BetaMixture'
    fitNULL                                 html  
Rd warning: /tmp/RtmpiM2ylD/R.INSTALL74b2c538f74/PANR/man/fitNULL.Rd:25: missing file link 'dbeta'
    infer                                   html  
    p2SNR                                   html  
    permNULL                                html  
Rd warning: /tmp/RtmpiM2ylD/R.INSTALL74b2c538f74/PANR/man/permNULL.Rd:28: missing file link 'BetaMixture'
    pvclustModule                           html  
    sigModules                              html  
    summarize                               html  
    view                                    html  
    viewLegend                              html  
    viewNestedModules                       html  
Rd warning: /tmp/RtmpiM2ylD/R.INSTALL74b2c538f74/PANR/man/viewNestedModules.Rd:9: missing file link 'RedeR'
Rd warning: /tmp/RtmpiM2ylD/R.INSTALL74b2c538f74/PANR/man/viewNestedModules.Rd:38: missing file link 'RedeR'
    viewPAN                                 html  
Rd warning: /tmp/RtmpiM2ylD/R.INSTALL74b2c538f74/PANR/man/viewPAN.Rd:10: missing file link 'RedeR'
Rd warning: /tmp/RtmpiM2ylD/R.INSTALL74b2c538f74/PANR/man/viewPAN.Rd:28: missing file link 'layout'
Rd warning: /tmp/RtmpiM2ylD/R.INSTALL74b2c538f74/PANR/man/viewPAN.Rd:42: missing file link 'RedeR'
Rd warning: /tmp/RtmpiM2ylD/R.INSTALL74b2c538f74/PANR/man/viewPAN.Rd:60: missing file link 'layout'
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (PANR)
Making 'packages.html' ... done