PCpheno

Package: PCpheno
Type: Package
Title: Phenotypes and cellular organizational units
Version: 1.34.0
Author: Nolwenn Le Meur and Robert Gentleman
Description: Tools to integrate, annotate, and link phenotypes to
cellular organizational units such as protein complexes and
pathways.
Depends: R (>= 2.10), Category, ScISI (>= 1.3.0), SLGI, ppiStats,
ppiData, annotate (>= 1.17.4)
Imports: AnnotationDbi, Biobase, Category, GO.db, graph, graphics,
GSEABase, KEGG.db, methods, ScISI, stats, stats4
Suggests: KEGG.db, GO.db, org.Sc.sgd.db
Maintainer: Nolwenn Le Meur <nlemeur@gmail.com>
License: Artistic-2.0
biocViews: GraphAndNetwork, Proteomics, Network
NeedsCompilation: no
Packaged: 2016-05-04 03:05:41 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'PCpheno' ...
** R
** data
** inst
** preparing package for lazy loading
No methods found in "Biobase" for requests: listlen
No methods found in "annotate" for requests: pubmed, buildPubMedAbst
No methods found in "BiocGenerics" for requests: plot
** help
*** installing help indices
  converting help for package 'PCpheno'
    finding HTML links ... done
    CoHyperGParams-class                    html  
    CoHyperGResult-class                    html  
    Dudley                                  html  
    Giaever                                 html  
    HI                                      html  
    KEGG2SCISI                              html  
    Kastenmayer                             html  
    Lesage                                  html  
    Osterberg                               html  
    PCpheno.package                         html  
    SGDphenoL                               html  
    YEASTOHNOLOG                            html  
    buildFDMat                              html  
    categoryToEntrezBuilder                 html  
    complexStatus                           html  
    deResult-class                          html  
    densityEstimate                         html  
    getDescr                                html  
    getFDgene                               html  
    graphTheory                             html  
    gtResult-class                          html  
    overlap                                 html  
    plot                                    html  
    ppiInteraction                          html  
    reduceM                                 html  
    testResult-class                        html  
    truncName                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
No methods found in "Biobase" for requests: listlen
No methods found in "annotate" for requests: pubmed, buildPubMedAbst
No methods found in "BiocGenerics" for requests: plot
* DONE (PCpheno)
Making 'packages.html' ... done