PIGE

Package: PIGE
Type: Package
Title: Self contained gene set analysis for gene- and
pathway-environment interaction analysis
Version: 0.9
Date: 2013-12-30
Author: Benoit Liquet, Therese Truong
Maintainer: Benoit Liquet <benoit.liquet@isped.u-bordeaux2.fr>
Depends: snowfall, ARTP, xtable, survival
Description: Extension of the ARTP package for gene- and pathway-environment
interaction
License: GPL (>= 2.0)
Collate: 'ARTP-GE.R' 'data.to.PIGE.R' 'permutation.snp.R'
'PIGE-package.R' 'compute.p.snp.obs.R' 'LR.inter.cat.R'
'LR.inter.cont.R' 'permutation.wrapper.cont.R' 'LR.cont.R'
'permutation.wrapper.cat.inter.R'
'permutation.wrapper.cont.inter.R'
'permutation.wrapper.cat.inter.Y.and.X.R'
'permutation.wrapper.cont.inter.Y.and.X.R'
'permutation.wrapper.cont.Y.and.X.R' 'LR.cont.surv.R'
'LR.inter.cat.surv.R' 'LR.inter.cont.surv.R'
'data.to.list.gene.snp.R'
Packaged: 2013-12-30 05:47:20 UTC; liquet
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-12-30 07:44:39

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'PIGE' ...
** package 'PIGE' successfully unpacked and MD5 sums checked
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'PIGE'
    finding HTML links ... done
    ARTP.GE                                 html  
    LR.cont                                 html  
    LR.cont.surv                            html  
    LR.inter.cat                            html  
    LR.inter.cat.surv                       html  
    LR.inter.cont                           html  
    LR.inter.cont.surv                      html  
    PIGE-package                            html  
    compute.p.snp.obs                       html  
    data.pathway                            html  
    data.pathway.surv                       html  
    data.pige                               html  
    data.surv                               html  
    data.to.PIGE                            html  
    data.to.list.gene.snp                   html  
    list.gene.snp                           html  
    list.gene.snp.surv                      html  
    permutation.snp                         html  
    permutation.wrapper.cat.inter           html  
    permutation.wrapper.cat.inter.Y.and.X   html  
    permutation.wrapper.cont                html  
    permutation.wrapper.cont.Y.and.X        html  
    permutation.wrapper.cont.inter          html  
    permutation.wrapper.cont.inter.Y.and.X
                                            html  
    snp.gene.select                         html  
** building package indices
** testing if installed package can be loaded
* DONE (PIGE)
Making 'packages.html' ... done