Last data update: 2014.03.03


Package: Path2PPI
Type: Package
Title: Prediction of pathway-related protein-protein interaction
Version: 1.2.2
Date: 2016-03-02
Authors@R: c(
person("Oliver", "Philipp",
email = "",
role = c("aut","cre")),
person("Ina", "Koch",
email = "",
role = "ctb")
Maintainer: Oliver Philipp <>
Description: Package to predict protein-protein interaction (PPI) networks in
target organisms for which only a view information about
PPIs is available. Path2PPI predicts PPI networks based on sets of
proteins which can belong to a certain pathway from well-established model
organisms. It helps to combine and transfer information of a certain
pathway or biological process from several reference organisms to one
target organism. Path2PPI only depends on the sequence similarity of the
involved proteins.
License: GPL (>= 2)
Depends: R (>= 3.2.1), igraph (>= 1.0.1), methods
Suggests: knitr, rmarkdown, RUnit, BiocGenerics, BiocStyle
VignetteBuilder: knitr
Author: Oliver Philipp [aut, cre],
Ina Koch [ctb]
biocViews: NetworkInference, SystemsBiology, Network, Proteomics,
NeedsCompilation: no
Packaged: 2016-05-16 05:38:24 UTC; biocbuild

● BiocViews: Network, NetworkInference, Pathways, Proteomics, SystemsBiology
3 images, 10 functions, 1 datasets
● Reverse Depends: 0

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'Path2PPI' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'Path2PPI'
    finding HTML links ... done
    Path2PPI                                html  
    addReference                            html  
    ai                                      html  
    getHybridNetwork                        html  
    getPPI                                  html  
    homologyScore                           html  
    plot.Path2PPI                           html  
    finding level-2 HTML links ... done

    predictPPI                              html  
    removeReference                         html  
    showInteraction                         html  
    showReferences                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Path2PPI)
Making 'packages.html' ... done