Last data update: 2014.03.03
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Path2PPI
Package: Path2PPI
Type: Package
Title: Prediction of pathway-related protein-protein interaction
networks
Version: 1.2.2
Date: 2016-03-02
Authors@R: c(
person("Oliver", "Philipp",
email = "contact@oliverphilipp.info",
role = c("aut","cre")),
person("Ina", "Koch",
email = "ina.koch@bioinformatik.uni-frankfurt.de",
role = "ctb")
)
Maintainer: Oliver Philipp <contact@oliverphilipp.info>
Description: Package to predict protein-protein interaction (PPI) networks in
target organisms for which only a view information about
PPIs is available. Path2PPI predicts PPI networks based on sets of
proteins which can belong to a certain pathway from well-established model
organisms. It helps to combine and transfer information of a certain
pathway or biological process from several reference organisms to one
target organism. Path2PPI only depends on the sequence similarity of the
involved proteins.
License: GPL (>= 2)
URL: http://www.bioinformatik.uni-frankfurt.de/
Depends: R (>= 3.2.1), igraph (>= 1.0.1), methods
Suggests: knitr, rmarkdown, RUnit, BiocGenerics, BiocStyle
VignetteBuilder: knitr
Author: Oliver Philipp [aut, cre],
Ina Koch [ctb]
biocViews: NetworkInference, SystemsBiology, Network, Proteomics,
Pathways
NeedsCompilation: no
Packaged: 2016-05-16 05:38:24 UTC; biocbuild
Install log
* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'Path2PPI' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'Path2PPI'
finding HTML links ... done
Path2PPI html
addReference html
ai html
getHybridNetwork html
getPPI html
homologyScore html
plot.Path2PPI html
finding level-2 HTML links ... done
predictPPI html
removeReference html
showInteraction html
showReferences html
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Path2PPI)
Making 'packages.html' ... done
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