ProNet

Package: ProNet
Type: Package
Title: Biological Network Construction, Visualization and Analyses
Version: 1.0.0
Date: 2015-10-16
Author: Xiang-Yun Wu and Xia-Yu Xia
Maintainer: Xia-Yu Xia <xiaxiayu.thu@hotmail.com>
Description: High-throughput experiments are now widely used in biological researches, which improves both the quality and quantity of omics data. Network-based presentation of these data has become a popular way in data analyses. This package mainly provides functions for biological network construction, visualization and analyses. Networks can be constructed either from experimental data or from a set of proteins and integrated PPI database. Based on them, users can perform traditional visualization, along with the subcellular localization based ones for Homo sapiens and Arabidopsis thaliana. Furthermore, analyses including topological statistics, functional module clustering and go profiling can also be achieved.
Depends: R (>= 3.1.0), Rcpp (>= 0.10.4), igraph (>= 0.5.5-2), MCL,
linkcomm
License: GPL (>= 2)
NeedsCompilation: yes
Packaged: 2015-10-22 14:58:59 UTC; surain
Repository: CRAN
Date/Publication: 2015-10-22 22:14:27

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'ProNet' ...
** package 'ProNet' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c complex.c -o complex.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o ProNet.so complex.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/ProNet/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'ProNet'
    finding HTML links ... done
    GO_component                            html  
    GO_function                             html  
    GO_process                              html  
    HPRD                                    html  
    ProNet-package                          html  
    assemble                                html  
    ath                                     html  
    cluster                                 html  
    comp.rand.subnet                        html  
    comp.subnet                             html  
    construct_local                         html  
    construct_nlocal                        html  
    construction                            html  
    enrichment.annotation                   html  
    extraction                              html  
    go.profiles                             html  
    graph.add                               html  
    human                                   html  
    locDB                                   html  
    location                                html  
    mcode                                   html  
    net.attack                              html  
    net.comparing                           html  
    net.robustness                          html  
    topology                                html  
    topology_anc                            html  
    topology_betweenness                    html  
    topology_closeness                      html  
    topology_cluster_coeffi                 html  
    topology_degree                         html  
    topology_ec                             html  
    topology_shortest_paths                 html  
    topology_simple                         html  
    visualization                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ProNet)
Making 'packages.html' ... done