R2GUESS

Package: R2GUESS
Version: 1.7
Date: 2016-01-26
Title: Wrapper Functions for GUESS
Authors@R: c(person("Gianluca", "Campanella",
role=c("cre"), email="gianluca@campanella.org"),
person("Benoit", "Liquet",
role="aut", email="b.liquet@uq.edu.au"),
person("Marc", "Chadeau-Hyam",
role="aut", email="m.chadeau@imperial.ac.uk"),
person("Leonardo", "Bottolo",
role="ctb", email="l.bottolo@imperial.ac.uk"),
person("Sylvia", "Richardson",
role="ctb", email="sylvia.richardson@mrc-bsu.cam.ac.uk"))
Depends: R (>= 3.0.0), fields, MCMCpack, methods, mixOmics, mvtnorm,
snowfall
Description: Wrapper functions for GUESS, a GPU-enabled sparse Bayesian variable
selection method for linear regression based analysis of possibly
multivariate/correlated outcomes.
License: GPL (>= 2)
SystemRequirements: GNU Scientific Library (>= 1.12)
NeedsCompilation: yes
Packaged: 2016-01-26 13:14:38 UTC; gc
Author: Gianluca Campanella [cre],
Benoit Liquet [aut],
Marc Chadeau-Hyam [aut],
Leonardo Bottolo [ctb],
Sylvia Richardson [ctb]
Maintainer: Gianluca Campanella <gianluca@campanella.org>
Repository: CRAN
Date/Publication: 2016-01-26 15:19:28

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'R2GUESS' ...
** package 'R2GUESS' successfully unpacked and MD5 sums checked
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for gsl-config... /usr/bin/gsl-config
checking for GSL - version >= 1.12... yes
checking whether CULA is installed... no
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I/usr/local/include    -fpic  -g -O2  -c Classes/CM.cc -o Classes/CM.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I/usr/local/include    -fpic  -g -O2  -c Classes/Double_Matrices.cc -o Classes/Double_Matrices.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I/usr/local/include    -fpic  -g -O2  -c Classes/Double_Matrices_cont.cc -o Classes/Double_Matrices_cont.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I/usr/local/include    -fpic  -g -O2  -c Classes/DR.cc -o Classes/DR.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I/usr/local/include    -fpic  -g -O2  -c Classes/g_AdMH.cc -o Classes/g_AdMH.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I/usr/local/include    -fpic  -g -O2  -c Classes/Int_Matrices.cc -o Classes/Int_Matrices.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I/usr/local/include    -fpic  -g -O2  -c Classes/Int_Matrices_var_dim.cc -o Classes/Int_Matrices_var_dim.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I/usr/local/include    -fpic  -g -O2  -c Classes/Move_monitor.cc -o Classes/Move_monitor.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I/usr/local/include    -fpic  -g -O2  -c Classes/Prior_param.cc -o Classes/Prior_param.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I/usr/local/include    -fpic  -g -O2  -c Classes/String_Matrices.cc -o Classes/String_Matrices.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I/usr/local/include    -fpic  -g -O2  -c Classes/Temperatures.cc -o Classes/Temperatures.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I/usr/local/include    -fpic  -g -O2  -c Main/GUESS.cc -o Main/GUESS.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I/usr/local/include    -fpic  -g -O2  -c Routines/cond_post.cc -o Routines/cond_post.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I/usr/local/include    -fpic  -g -O2  -c Routines/dyn_name.cc -o Routines/dyn_name.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I/usr/local/include    -fpic  -g -O2  -c Routines/matrix_handling.cc -o Routines/matrix_handling.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I/usr/local/include    -fpic  -g -O2  -c Routines/moves.cc -o Routines/moves.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I/usr/local/include    -fpic  -g -O2  -c Routines/post_processing.cc -o Routines/post_processing.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I/usr/local/include    -fpic  -g -O2  -c Routines/rand.cc -o Routines/rand.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I/usr/local/include    -fpic  -g -O2  -c Routines/regression.cc -o Routines/regression.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I/usr/local/include    -fpic  -g -O2  -c Routines/xml_file_read.cc -o Routines/xml_file_read.o
Routines/xml_file_read.cc: In member function 'bool MaXmlTagRead::GetTagPos(const char*, long int, long int, long int&)':
Routines/xml_file_read.cc:154:32: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
    fread(&ch,sizeof(char),1,XF);
                                ^
Routines/xml_file_read.cc: In member function 'bool MaXmlTagRead::GetTagFirstPos(const char*, long int, long int, long int&)':
Routines/xml_file_read.cc:243:32: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
    fread(&ch,sizeof(char),1,XF);
                                ^
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I/usr/local/include    -fpic  -g -O2  -c Routines/guess_math.c -o Routines/guess_math.o
g++ -L/usr/local/lib64 -o GUESS Classes/CM.o Classes/Double_Matrices.o Classes/Double_Matrices_cont.o Classes/DR.o Classes/g_AdMH.o Classes/Int_Matrices.o Classes/Int_Matrices_var_dim.o Classes/Move_monitor.o Classes/Prior_param.o Classes/String_Matrices.o Classes/Temperatures.o Main/GUESS.o Routines/cond_post.o Routines/dyn_name.o Routines/matrix_handling.o Routines/moves.o Routines/post_processing.o Routines/rand.o Routines/regression.o Routines/xml_file_read.o Routines/guess_math.o -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm
installing via 'install.libs.R' to /home/ddbj/local/lib64/R/library/R2GUESS
Installing GUESS to /home/ddbj/local/lib64/R/library/R2GUESS/bin
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'R2GUESS'
    finding HTML links ... done
    Analysis.permutation                    html  
    Extend.R2GUESS                          html  
    FDR.permutation                         html  
    MAP.file                                html  
    Postprocess.R2GUESS                     html  
    R2GUESS-package                         html  
    R2GUESS                                 html  
    R2GUESS.perm                            html  
    Resume.R2GUESS                          html  
    as.ESS.object                           html  
    boxplotbeta                             html  
    check.convergence                       html  
    data.X                                  html  
    data.Y.Hopx                             html  
    example.as.ESS.object                   html  
    get.best.models                         html  
    get.g.sweep                             html  
    get.sweep.best.model                    html  
    pairwise.correlation                    html  
    plot.ESS                                html  
    plotMPPI                                html  
    plotcim                                 html  
    plotcim.explore                         html  
    plotmodel                               html  
    plotvariable                            html  
    print.ESS                               html  
    sample.beta                             html  
    summary.ESS                             html  
    summarybest.model                       html  
    wrapper                                 html  
** building package indices
** testing if installed package can be loaded
* DONE (R2GUESS)
Making 'packages.html' ... done