RCASPAR

Package: RCASPAR
Type: Package
Title: A package for survival time prediction based on a piecewise
baseline hazard Cox regression model.
Version: 1.18.0
Date: 2010-08-23
Author: Douaa Mugahid, Lars Kaderali
Maintainer: Douaa Mugahid <douaa.mugahid@gmail.com>, Lars Kaderali <lars.kaderali@uni-greifswald.de>
Description: The package is the R-version of the C-based software old{CASPAR} (Kaderali,2006: url{http://bioinformatics.oxfordjournals.org/content/22/12/1495}). It is meant to help predict survival times in the presence of high-dimensional explanatory covariates. The model is a piecewise baseline hazard Cox regression model with an Lq-norm based prior that selects for the most important regression coefficients, and in turn
the most relevant covariates for survival analysis. It was primarily tried on gene expression and aCGH data, but can be used on any other type of high-dimensional data and in
disciplines other than biology and medicine.
biocViews: aCGH, GeneExpression, Genetics, Proteomics, Visualization
License: GPL (>=3)
LazyLoad: yes
NeedsCompilation: no
Packaged: 2016-05-04 04:03:56 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'RCASPAR' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'RCASPAR'
    finding HTML links ... done
    Bergamaschi                             html  
    RCASPAR-package                         html  
    STpredictor_BLH                         html  
    STpredictor_xvBLH                       html  
    deriv_weight_estimator_BLH              html  
    deriv_weight_estimator_BLH_noprior      html  
    kmplt                                   html  
    kmplt_svrl                              html  
    logrnk                                  html  
    pltgamma                                html  
    pltprior                                html  
    simpson                                 html  
    survData                                html  
    survivAURC                              html  
    survivROC                               html  
    trapezoid                               html  
    weight_estimator_BLH                    html  
    weight_estimator_BLH_noprior            html  
    weights_BLH                             html  
    weights_xvBLH                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RCASPAR)
Making 'packages.html' ... done