RDAVIDWebService

Package: RDAVIDWebService
Type: Package
Title: An R Package for retrieving data from DAVID into R objects using
Web Services API.
Version: 1.10.0
Date: 2014-04-15
Author: Cristobal Fresno and Elmer A. Fernandez
Maintainer: Cristobal Fresno <cfresno@bdmg.com.ar>
Description: Tools for retrieving data from the Database for
Annotation, Visualization and Integrated Discovery (DAVID)
using Web Services into R objects. This package offers the main
functionalities of DAVID website including: i) user friendly
connectivity to upload gene/background list/s, change
gene/background position, select current specie/s, select
annotations, etc. ii) Reports of the submitted Gene List,
Annotation Category Summary, Gene/Term Clusters, Functional
Annotation Chart, Functional Annotation Table
License: GPL (>=2)
URL: http://www.bdmg.com.ar
Imports: Category, GO.db, RBGL, rJava
Depends: R (>= 2.14.1), methods, graph, GOstats, ggplot2
Collate: 'DAVIDdemo-ids.R' 'DAVIDdemo-geneList.R'
'DAVIDdemo-annotationSummary.R'
'DAVIDdemo-functionalAnnotationChart.R'
'DAVIDdemo-annotationTable.R' 'DAVIDdemo-clusterReport.R'
'DAVIDResult-class.R' 'DAVIDGenes-class.R'
'DAVIDFunctionalAnnotationChart-class.R' 'DAVIDCluster-class.R'
'DAVIDGeneCluster-class.R' 'DAVIDTermCluster-class.R'
'DAVIDFunctionalAnnotationTable-class.R' 'DAVIDGODag-class.R'
'DAVIDWebService-class.R' 'DAVIDClasses-show.R'
'DAVIDClasses-ids.R' 'DAVIDClasses-plot2D.R'
'DAVIDClasses-summary.R' 'DAVIDClasses-genes.R'
'DAVIDClasses-categories.R' 'DAVIDResult-getters.R'
'DAVIDGenes-methods.R' 'DAVIDCluster-methods.R'
'DAVIDFunctionalAnnotationTable-methods.R'
'DAVIDGODag-methods.R' 'DAVIDWebService-accessors.R'
'DAVIDWebService-methods.R' 'DAVIDWebService-reports.R'
'DAVIDClasses-constructor.R' 'RDAVIDWebService-package.R'
Suggests: Rgraphviz
InstallableEverywhere: yes
biocViews: Visualization, DifferentialExpression, GraphAndNetwork
NeedsCompilation: no
Packaged: 2016-05-04 05:00:02 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'RDAVIDWebService' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'RDAVIDWebService'
    finding HTML links ... done
    DAVIDClasses-categories                 html  
    DAVIDClasses-constructor                html  
    DAVIDClasses-genes                      html  
    DAVIDClasses-ids                        html  
    DAVIDClasses-plot2D                     html  
    DAVIDClasses-show                       html  
    DAVIDClasses-summary                    html  
    DAVIDCluster-class                      html  
    DAVIDCluster-methods                    html  
    DAVIDFunctionalAnnotationChart-class    html  
    DAVIDFunctionalAnnotationTable-class    html  
    DAVIDFunctionalAnnotationTable-methods
                                            html  
    DAVIDGODag-class                        html  
    DAVIDGODag-methods                      html  
    DAVIDGeneCluster-class                  html  
    DAVIDGenes-class                        html  
    DAVIDGenes-methods                      html  
    DAVIDResult-class                       html  
    DAVIDResult-getters                     html  
    DAVIDTermCluster-class                  html  
    DAVIDWebService-accessors               html  
    DAVIDWebService-class                   html  
    DAVIDWebService-methods                 html  
    DAVIDWebService-package                 html  
    DAVIDWebService-reports                 html  
    DAVIDdemo-annotationSummary             html  
    DAVIDdemo-annotationTable               html  
    DAVIDdemo-clusterReport                 html  
    DAVIDdemo-functionalAnnotationChart     html  
    DAVIDdemo-geneList                      html  
    DAVIDdemo-ids                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RDAVIDWebService)
Making 'packages.html' ... done