REPTILE

Package: REPTILE
Type: Package
Title: Regulatory DNA Element Prediction
Version: 1.0
Date: 2016-6-16
Author: Yupeng He
Description: Predicting regulatory DNA elements based on epigenomic signatures. This package is more of a set of building blocks than a direct solution. REPTILE regulatory prediction pipeline is built on this R package. See <https://github.com/yupenghe/REPTILE> for more information.
Maintainer: Yupeng He <yupeng.he.bioinfo@gmail.com>
URL: https://github.com/yupenghe/REPTILE
License: BSD_2_clause + file LICENSE
Depends: R (>= 3.2.2), foreach (>= 1.4.3), doParallel (>= 1.0.10)
Imports: optparse (>= 1.3.2), randomForest (>= 4.6-12), flux (>= 0.3-0)
NeedsCompilation: no
Packaged: 2016-06-21 06:36:30 UTC; yupeng
Repository: CRAN
Date/Publication: 2016-06-21 09:23:58

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'REPTILE' ...
** package 'REPTILE' successfully unpacked and MD5 sums checked
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'REPTILE'
    finding HTML links ... done
    REPTILE-package                         html  
    calculate_epimark_deviation             html  
    get_option_parser_compute_score         html  
    get_option_parser_evaluation            html  
    get_option_parser_training              html  
    read_epigenomic_data                    html  
    read_label                              html  
    reptile_eval_prediction                 html  
    reptile_predict                         html  
    reptile_predict_genome_wide             html  
    reptile_predict_one_mode                html  
    reptile_train                           html  
    reptile_train_one_mode                  html  
    rsd                                     html  
** building package indices
** testing if installed package can be loaded
* DONE (REPTILE)
Making 'packages.html' ... done