RNAither

Package: RNAither
Title: Statistical analysis of high-throughput RNAi screens
Version: 2.20.0
Author: Nora Rieber and Lars Kaderali, University of Heidelberg,
Viroquant Research Group Modeling, Im Neuenheimer Feld 267,
69120 Heidelberg, Germany
Maintainer: Lars Kaderali <lars.kaderali@uni-greifswald.de>
Depends: R (>= 2.10), topGO, RankProd, prada
Imports: geneplotter, limma, biomaRt, car, splots, methods
Description: RNAither analyzes cell-based RNAi screens, and includes
quality assessment, customizable normalization and statistical
tests, leading to lists of significant genes and biological
processes.
License: Artistic-2.0
biocViews: CellBasedAssays, QualityControl, Preprocessing,
Visualization, Annotation, GO
NeedsCompilation: no
Packaged: 2016-05-05 01:59:59 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'RNAither' ...
** R
** data
** inst
** preparing package for lazy loading

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
** help
*** installing help indices
  converting help for package 'RNAither'
    finding HTML links ... done
    BScore                                  html  
    DRQualControl                           html  
    LiWongRank                              html  
    MannWhitney                             html  
    RNAither-package                        html  
    RankProduct                             html  
    SNRQualControl                          html  
    Ttest                                   html  
    ZPRIMEQualControl                       html  
    ZScore                                  html  
    ZScorePerScreen                         html  
    ZScorePlot                              html  
    ZScorePlotTwo                           html  
    channelPlot                             html  
    closestToZero                           html  
    compareHits                             html  
    compareReplicaPlates                    html  
    compareReplicateSD                      html  
    compareReplicateSDPerScreen             html  
    compareReplicates                       html  
    controlDensity                          html  
    controlDensityPerPlate                  html  
    controlDensityPerScreen                 html  
    controlNorm                             html  
    createSubset                            html  
    dataset                                 html  
    datasetDrosophila                       html  
    discardLabtek                           html  
    discardWells                            html  
    divNorm                                 html  
    divideChannels                          html  
    eraseDataSetColumn                      html  
    findReplicates                          html  
    furthestFromZero                        html  
    generateDatasetFile                     html  
    generateRepMatNoFilter                  html  
    generateReplicateMat                    html  
    gseaAnalysis                            html  
    header                                  html  
    headerDrosophila                        html  
    hitselectionPval                        html  
    hitselectionZscore                      html  
    hitselectionZscorePval                  html  
    incorporatepValVec                      html  
    indexSubset                             html  
    joinDatasetFiles                        html  
    joinDatasets                            html  
    lowessNorm                              html  
    mainAnalysis                            html  
    makeBoxplot4PlateType                   html  
    makeBoxplotControls                     html  
    makeBoxplotControlsPerPlate             html  
    makeBoxplotControlsPerScreen            html  
    makeBoxplotPerPlate                     html  
    makeBoxplotPerScreen                    html  
    multTestAdjust                          html  
    numCellQualControl                      html  
    orderGeneIDs                            html  
    pValVec1                                html  
    pValVec2                                html  
    percCellQualControl                     html  
    plotBar                                 html  
    plotControlHisto                        html  
    plotControlHistoPerplate                html  
    plotControlHistoPerscreen               html  
    plotHisto                               html  
    plotHistoPerplate                       html  
    plotHistoPerscreen                      html  
    plotQQ                                  html  
    plotQQperplate                          html  
    plotQQperscreen                         html  
    quantileNormalization                   html  
    replicatesCV                            html  
    replicatesSpearmancor                   html  
    rms                                     html  
    rnaither                                html  
    saveDataset                             html  
    saveOldIntensityColumns                 html  
    savepValVec                             html  
    scoredDataset1                          html  
    scoredDataset2                          html  
    spatialDistrib                          html  
    spatialDistribHits                      html  
    subtractBackground                      html  
    sumChannels                             html  
    summarizeReps                           html  
    summarizeRepsNoFiltering                html  
    trim                                    html  
    varAdjust                               html  
    vennDiag                                html  
    volcanoPlot                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
* DONE (RNAither)
Making 'packages.html' ... done