Last data update: 2014.03.03
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RNAprobR
Package: RNAprobR
Title: An R package for analysis of massive parallel sequencing based
RNA structure probing data
Version: 1.4.0
Date: 2015-09-23
Authors@R: c(person("Lukasz Jan", "Kielpinski", role=c("aut"),
email="kielpinski@bio.ku.dk"), person("Nikos", "Sidiropoulos",
role=c("cre", "aut"), email="nikos.sidiro@gmail.com"), person("Jeppe",
"Vinther", role="aut", email="jvinther@bio.ku.dk"))
Description: This package facilitates analysis of Next Generation Sequencing
data for which positional information with a single nucleotide resolution
is a key. It allows for applying different types of relevant
normalizations, data visualization and export in a table or UCSC
compatible bedgraph file.
Depends: R (>= 3.1.1), GenomicFeatures (>= 1.16.3), plyr (>= 1.8.1),
BiocGenerics (>= 0.10.0)
Imports: Biostrings (>= 2.32.1), GenomicRanges (>= 1.16.4), Rsamtools (>=
1.16.1), rtracklayer (>= 1.24.2), GenomicAlignments (>= 1.5.12)
Suggests: BiocStyle
License: GPL (>=2)
LazyData: true
biocViews: Coverage, Normalization, Sequencing, GenomeAnnotation
NeedsCompilation: no
Packaged: 2016-05-04 06:09:19 UTC; biocbuild
Author: Lukasz Jan Kielpinski [aut],
Nikos Sidiropoulos [cre, aut],
Jeppe Vinther [aut]
Maintainer: Nikos Sidiropoulos <nikos.sidiro@gmail.com>
● BiocViews: Coverage, GenomeAnnotation, Normalization, Sequencing
●
4 images,
18 functions,
0 datasets
●
Reverse Depends: 0
Install log
* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'RNAprobR' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'RNAprobR'
finding HTML links ... done
BED2txDb html
GR2norm_df html
bam2bedgraph html
bedgraph2norm html
comp html
compdata html
correct_oversaturation html
dtcr html
k2n_calc html
norm2bedgraph html
norm_df2GR html
plotRNA html
plotReads html
readsamples html
slograt html
swinsor html
swinsor_vector html
winsor html
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RNAprobR)
Making 'packages.html' ... done
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