Last data update: 2014.03.03


Package: RNAprobR
Title: An R package for analysis of massive parallel sequencing based
RNA structure probing data
Version: 1.4.0
Date: 2015-09-23
Authors@R: c(person("Lukasz Jan", "Kielpinski", role=c("aut"),
email=""), person("Nikos", "Sidiropoulos",
role=c("cre", "aut"), email=""), person("Jeppe",
"Vinther", role="aut", email=""))
Description: This package facilitates analysis of Next Generation Sequencing
data for which positional information with a single nucleotide resolution
is a key. It allows for applying different types of relevant
normalizations, data visualization and export in a table or UCSC
compatible bedgraph file.
Depends: R (>= 3.1.1), GenomicFeatures (>= 1.16.3), plyr (>= 1.8.1),
BiocGenerics (>= 0.10.0)
Imports: Biostrings (>= 2.32.1), GenomicRanges (>= 1.16.4), Rsamtools (>=
1.16.1), rtracklayer (>= 1.24.2), GenomicAlignments (>= 1.5.12)
Suggests: BiocStyle
License: GPL (>=2)
LazyData: true
biocViews: Coverage, Normalization, Sequencing, GenomeAnnotation
NeedsCompilation: no
Packaged: 2016-05-04 06:09:19 UTC; biocbuild
Author: Lukasz Jan Kielpinski [aut],
Nikos Sidiropoulos [cre, aut],
Jeppe Vinther [aut]
Maintainer: Nikos Sidiropoulos <>

● BiocViews: Coverage, GenomeAnnotation, Normalization, Sequencing
4 images, 18 functions, 0 datasets
● Reverse Depends: 0

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'RNAprobR' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'RNAprobR'
    finding HTML links ... done
    BED2txDb                                html  
    GR2norm_df                              html  
    bam2bedgraph                            html  
    bedgraph2norm                           html  
    comp                                    html  
    compdata                                html  
    correct_oversaturation                  html  
    dtcr                                    html  
    k2n_calc                                html  
    norm2bedgraph                           html  
    norm_df2GR                              html  
    plotRNA                                 html  
    plotReads                               html  
    readsamples                             html  
    slograt                                 html  
    swinsor                                 html  
    swinsor_vector                          html  
    winsor                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RNAprobR)
Making 'packages.html' ... done