RNAseqData.HNRNPC.bam.chr14

Package: RNAseqData.HNRNPC.bam.chr14
Title: Aligned reads from RNAseq experiment: Transcription profiling by
high throughput sequencing of HNRNPC knockdown and control HeLa
cells
Description: The package contains 8 BAM files, 1 per sequencing run. Each
BAM file was obtained by (1) aligning the reads (paired-end) to the
full hg19 genome with TopHat2, and then (2) subsetting to keep only
alignments on chr14. See accession number E-MTAB-1147 in the
ArrayExpress database for details about the experiment, including links
to the published study (by Zarnack et al., 2012) and to the
FASTQ files.
URL: http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1147/
Version: 0.10.0
Author: H. Pages
Maintainer: H. Pages <hpages@fhcrc.org>
Suggests: GenomicAlignments, BiocInstaller
biocViews: ExperimentData, Genome, Homo_sapiens_Data, SequencingData,
GEO, NCI, RNASeqData, ArrayExpress
License: LGPL
NeedsCompilation: no
Packaged: 2016-05-07 20:34:57 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'RNAseqData.HNRNPC.bam.chr14' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'RNAseqData.HNRNPC.bam.chr14'
    finding HTML links ... done
    RNAseqData.HNRNPC.bam.chr14-package     html  
Rd warning: /tmp/Rtmpzb4REP/R.INSTALL3e285fb5520b/RNAseqData.HNRNPC.bam.chr14/man/RNAseqData.HNRNPC.bam.chr14-package.Rd:82: missing file link 'readGAlignmentPairs'
Rd warning: /tmp/Rtmpzb4REP/R.INSTALL3e285fb5520b/RNAseqData.HNRNPC.bam.chr14/man/RNAseqData.HNRNPC.bam.chr14-package.Rd:86: missing file link 'ScanBamParam'
** building package indices
** testing if installed package can be loaded
* DONE (RNAseqData.HNRNPC.bam.chr14)
Making 'packages.html' ... done