Last data update: 2014.03.03


Package: ROTS
Type: Package
Title: Reproducibility-Optimized Test Statistic
Version: 1.0.0
Author: Fatemeh Seyednasrollah, Tomi Suomi, Laura L. Elo
Maintainer: Fatemeh Seyednasrollah <>
Description: Calculates the Reproducibility-Optimized Test Statistic
(ROTS) for differential testing in omics data.
biocViews: Software, GeneExpression, DifferentialExpression,
Microarray, RNASeq, Proteomics
License: GPL (>= 2)
LazyData: yes
LinkingTo: Rcpp
Imports: Rcpp, stats, Biobase, methods
Depends: R (>= 3.3)
NeedsCompilation: yes
Packaged: 2016-05-04 06:46:43 UTC; biocbuild

● BiocViews: DifferentialExpression, GeneExpression, Microarray, Proteomics, RNASeq, Software
1 images, 3 functions, 2 datasets
● Reverse Depends: 0

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'ROTS' ...
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c NeedForSpeed1.cpp -o NeedForSpeed1.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c NeedForSpeed2.cpp -o NeedForSpeed2.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c pvalue.cpp -o pvalue.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o NeedForSpeed1.o NeedForSpeed2.o RcppExports.o pvalue.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/ROTS/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'ROTS'
    finding HTML links ... done
    ROTS                                    html  
    affySpikeIn                             html  
    plot.ROTS                               html  
    summary.ROTS                            html  
    upsSpikeIn                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
Making 'packages.html' ... done