Last data update: 2014.03.03
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ROTS
Package: ROTS
Type: Package
Title: Reproducibility-Optimized Test Statistic
Version: 1.0.0
Author: Fatemeh Seyednasrollah, Tomi Suomi, Laura L. Elo
Maintainer: Fatemeh Seyednasrollah <fatsey@utu.fi>
Description: Calculates the Reproducibility-Optimized Test Statistic
(ROTS) for differential testing in omics data.
biocViews: Software, GeneExpression, DifferentialExpression,
Microarray, RNASeq, Proteomics
License: GPL (>= 2)
LazyData: yes
LinkingTo: Rcpp
Imports: Rcpp, stats, Biobase, methods
Depends: R (>= 3.3)
NeedsCompilation: yes
Packaged: 2016-05-04 06:46:43 UTC; biocbuild
● BiocViews: DifferentialExpression, GeneExpression, Microarray, Proteomics, RNASeq, Software
●
1 images,
3 functions,
2 datasets
●
Reverse Depends: 0
Install log
* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'ROTS' ...
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -fpic -g -O2 -c NeedForSpeed1.cpp -o NeedForSpeed1.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -fpic -g -O2 -c NeedForSpeed2.cpp -o NeedForSpeed2.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -fpic -g -O2 -c pvalue.cpp -o pvalue.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o ROTS.so NeedForSpeed1.o NeedForSpeed2.o RcppExports.o pvalue.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/ROTS/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'ROTS'
finding HTML links ... done
ROTS html
affySpikeIn html
plot.ROTS html
summary.ROTS html
upsSpikeIn html
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ROTS)
Making 'packages.html' ... done
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