RPA

Package: RPA
Type: Package
Title: RPA: Robust Probabilistic Averaging for probe-level analysis
Version: 1.28.0
Date: 2016-04-14
Author: Leo Lahti <leo.lahti@iki.fi>
Maintainer: Leo Lahti <leo.lahti@iki.fi>
Depends: R (>= 3.1.1), affy, BiocGenerics, methods, phyloseq
Suggests: affydata, parallel
biocViews: GeneExpression, Microarray, Preprocessing, QualityControl
Description: Probabilistic analysis of probe reliability and
differential gene expression on short oligonucleotide
arrays. Lahti et al. "Probabilistic Analysis of Probe
Reliability in Differential Gene Expression Studies with
Short Oligonucleotide Arrays", TCBB/IEEE, 2011.
http://doi.ieeecomputersociety.org/10.1109/TCBB.2009.38
License: BSD_2_clause + file LICENSE
URL: https://github.com/antagomir/RPA
BugReports: https://github.com/antagomir/RPA
LazyLoad: yes
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-05-04 03:15:05 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'RPA' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'RPA'
    finding HTML links ... done
    RPA-package                             html  
    RPA.iteration                           html  
    RPA.preprocess                          html  
    calculate.rpa                           html  
    collect.hyperparameters                 html  
    d.update.fast                           html  
    estimate.affinities                     html  
    estimate.hyperparameters                html  
    frpa                                    html  
    get.batches                             html  
    get.probe.matrix                        html  
    get.probe.parameters                    html  
    get.probeset                            html  
    hyperparameter.update                   html  
    levelmap                                html  
    n.phylotypes.per.oligo                  html  
    online.quantile                         html  
    probe.parameters.tolist                 html  
    probe.performance                       html  
    probeplot                               html  
    probetable                              html  
    retrieve.probesets                      html  
    rpa                                     html  
    rpa.complete                            html  
    rpa.fit                                 html  
    rpa.online                              html  
    rpa.plot                                html  
    rpa.summarize                           html  
    rpaplot                                 html  
    sample.probeset                         html  
    summarize.batch                         html  
    summarize.batches                       html  
    summarize.rpa                           html  
    summarize.sum                           html  
    summarize_probedata                     html  
    updating.hyperparameters                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RPA)
Making 'packages.html' ... done