RUVcorr

Package: RUVcorr
Type: Package
Title: Removal of unwanted variation for gene-gene correlations and
related analysis
Version: 1.4.2
Date: 2015-02-06
Author: Saskia Freytag
Maintainer: Saskia Freytag <freytag.s@wehi.edu.au>
Description: RUVcorr allows to apply global removal of unwanted variation
(ridged version of RUV) to real and simulated gene expression data.
Imports: corrplot, MASS, stats, lattice, grDevices, gridExtra,
snowfall, psych, BiocParallel, grid, bladderbatch, reshape2
License: GPL-2
Suggests: knitr, BiocStyle, hgu133a2.db
VignetteBuilder: knitr
biocViews: GeneExpression, Normalization
NeedsCompilation: no
Packaged: 2016-05-16 05:23:23 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'RUVcorr' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'RUVcorr'
    finding HTML links ... done
    ECDFPlot                                html  
    PCAPlot                                 html  
    RLEPlot                                 html  
    RUVNaiveRidge                           html  
    RUVcorr                                 html  
    assessQuality                           html  
    background                              html  
    calculateThreshold                      html  
    compareRanks                            html  
    correlationPlot                         html  
    eigenvaluePlot                          html  
    empNegativeControls                     html  
    findIQR                                 html  
    findMinmaxSamples                       html  
    findWeights                             html  
    funcPara                                html  
    funcThresh                              html  
    genePlot                                html  
    histogramPlot                           html  
    is.optimizeParameters                   html  
    is.simulateGEdata                       html  
    makePosSemiDef                          html  
    makeRankedList                          html  
    mashUp                                  html  
    optimizeParameters                      html  
    plot.optimizeParameters                 html  
    plotDesign                              html  
    plotThreshold                           html  
    print.simulateGEdata                    html  
    prioritise                              html  
    simulateGEdata                          html  
    splitByFactor                           html  
    wcor                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RUVcorr)
Making 'packages.html' ... done