Last data update: 2014.03.03
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RVPedigree
Package: RVPedigree
Title: Methods for Family-Based Rare-Variant Genetic Association Tests
Version: 0.0.3
Authors@R: c(person("Karim", "Oualkacha", email =
"oualkacha.karim@uqam.ca", role = c("aut", "cre")),
person("M'Hamed Lajmi", "Lakhal-Chaieb", email =
"Lajmi.Lakhal@mat.ulaval.ca", role = "aut"),
person("Celia M.T.", "Greenwood", email =
"celia.greenwood@mcgill.ca", role = "aut"),
person("Lennart C.", "Karssen", email =
"l.c.karssen@polyomica.com", role = "aut"),
person("Sodbo", "Sharapov", email =
"sharapovsodbo@gmail.com", role = "aut")
)
Author: Karim Oualkacha [aut, cre],
M'Hamed Lajmi Lakhal-Chaieb [aut],
Celia M.T. Greenwood [aut],
Lennart C. Karssen [aut],
Sodbo Sharapov [aut]
Maintainer: Karim Oualkacha <oualkacha.karim@uqam.ca>
Description: This is a collection of the five region-based
rare-variant genetic association tests. The following tests are
currently implemented: ASKAT, ASKAT-Normalized, VC-C1, VC-C2 and
VC-C3.
Depends: R (>= 3.2.2), foreach, doParallel, utils
Imports: ks, CompQuadForm, Matrix, snpStats, kinship2
Suggests: GenABEL, knitr, methods
License: GPL (>= 3)
Copyright: Celia M.T. Greenwood
LazyData: true
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-01-20 03:09:37 UTC; karimoualkacha
RoxygenNote: 5.0.1
Repository: CRAN
Date/Publication: 2016-01-20 09:12:22
Install log
* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'RVPedigree' ...
** package 'RVPedigree' successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'RVPedigree'
finding HTML links ... done
ASKAT.region html
Estim.H0.ASKAT html
Estim.H0.NormalizedASKAT html
Estim.H0.VCC html
Get.G html
GetRelMatrix html
Normality.test html
NormalizedASKAT.region html
Preparation.VCC html
Preparation.hap.perm html
RVPedigree-package html
RVPedigree html
VCC1.region html
VCC2.region html
VCC3.region html
compute.weights html
perm.hap html
pvalue.ASKAT html
pvalue.NormalizedASKAT html
pvalue.VCC1 html
pvalue.VCC2 html
pvalue.VCC3 html
read.haplo html
read.haplo.bedfile html
read.haplo.pedfile html
read.haplo.shapeit_haps html
read.pedigree html
readMapFile html
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RVPedigree)
Making 'packages.html' ... done
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