Rcade

Package: Rcade
Title: R-based analysis of ChIP-seq And Differential Expression - a
tool for integrating a count-based ChIP-seq analysis with
differential expression summary data.
Version: 1.14.0
Date: 2012-01-25
Author: Jonathan Cairns
Maintainer: Jonathan Cairns <jmcairns200@gmail.com>
Description: Rcade (which stands for "R-based analysis of ChIP-seq And
Differential Expression") is a tool for integrating ChIP-seq
data with differential expression summary data, through a
Bayesian framework. A key application is in identifing the
genes targeted by a transcription factor of interest - that is,
we collect genes that are associated with a ChIP-seq peak, and
differential expression under some perturbation related to that
TF.
Depends: R (>= 2.14.0), methods, GenomicRanges, baySeq, Rsamtools
Imports: graphics, S4Vectors, rgl, plotrix
Suggests: limma, biomaRt, RUnit, BiocGenerics, BiocStyle
License: GPL-2
biocViews: DifferentialExpression, GeneExpression, Transcription,
ChIPSeq, Sequencing, Genetics
NeedsCompilation: no
Packaged: 2016-05-04 04:45:04 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'Rcade' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'Rcade'
    finding HTML links ... done
    Rcade-class                             html  
    RcadeAnalysis                           html  
    RcadeSTAT1                              html  
    RcadeTrack-class                        html  
    constructRcadeTable                     html  
    countReads                              html  
    defineBins                              html  
    finding level-2 HTML links ... done

    diffCountsBaySeq                        html  
    exportRcade-methods                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Rcade)
Making 'packages.html' ... done