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RcppParallel

Package: RcppParallel
Type: Package
Title: Parallel Programming Tools for 'Rcpp'
Version: 4.3.19
Authors@R: c(
person("JJ", "Allaire", role = c("aut"), email = "jj@rstudio.com"),
person("Romain", "Francois", role = c("aut", "cph")),
person("Kevin", "Ushey", role = c("aut", "cre"), email = "kevin@rstudio.com"),
person("Gregory", "Vandenbrouck", role = "aut"),
person("Marcus", "Geelnard", role = c("aut", "cph"),
comment = "TinyThread library, http://tinythreadpp.bitsnbites.eu/"),
person(family = "RStudio", role = "cph"),
person(family = "Intel", role = c("aut", "cph"),
comment = "Intel TBB library, https://www.threadingbuildingblocks.org/"),
person(family = "Microsoft", role = "cph")
)
Description: High level functions for parallel programming with 'Rcpp'.
For example, the 'parallelFor()' function can be used to convert the work of
a standard serial "for" loop into a parallel one and the 'parallelReduce()'
function can be used for accumulating aggregate or other values.
Depends: R (>= 3.0.2)
Suggests: Rcpp, RUnit, knitr, rmarkdown
LinkingTo: BH (>= 1.60.0-1)
SystemRequirements: GNU make, Windows: cmd.exe and cscript.exe,
Solaris: g++ is required
License: GPL-2
URL: http://rcppcore.github.io/RcppParallel
https://github.com/RcppCore/RcppParallel
Collate: 'build.R' 'hooks.R' 'options.R'
NeedsCompilation: yes
Packaged: 2016-05-04 17:42:45 UTC; kevin
Author: JJ Allaire [aut],
Romain Francois [aut, cph],
Kevin Ushey [aut, cre],
Gregory Vandenbrouck [aut],
Marcus Geelnard [aut, cph] (TinyThread library,
http://tinythreadpp.bitsnbites.eu/),
RStudio [cph],
Intel [aut, cph] (Intel TBB library,
https://www.threadingbuildingblocks.org/),
Microsoft [cph]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Repository: CRAN
Date/Publication: 2016-05-05 02:05:29
● 0 images, 3 functions, 0 datasets
● Reverse Depends: 2
Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'RcppParallel' ...
** package 'RcppParallel' successfully unpacked and MD5 sums checked
** libs
mkdir -p ../inst/lib/; 
cd tbb/src; 
if [ -n "" ]; then 
   make cpp0x=1 compiler=clang CXXFLAGS=-DTBB_NO_LEGACY=1 tbb_release tbbmalloc_release tbb_build_prefix=lib; 
elif [ -n "gcc" ]; then 
   make cpp0x=1 compiler=gcc CXXFLAGS=-DTBB_NO_LEGACY=1 tbb_release tbbmalloc_release tbb_build_prefix=lib; 
else 
   make cpp0x=1 CXXFLAGS=-DTBB_NO_LEGACY=1 tbb_release tbbmalloc_release tbb_build_prefix=lib; 
fi; 
cd ../..; 
cp tbb/build/lib_release/libtbb*.* ../inst/lib/
make[1]: Entering directory '/tmp/RtmpwVRmg2/R.INSTALL769137faa0b0/RcppParallel/src/tbb/src'
Created ../build/lib_release directory
make -C "../build/lib_release"  -r -f ../../build/Makefile.tbb cfg=release
make[2]: Entering directory '/tmp/RtmpwVRmg2/R.INSTALL769137faa0b0/RcppParallel/src/tbb/build/lib_release'
../../build/Makefile.tbb:31: CONFIG: cfg=release arch=intel64 compiler=gcc target=linux runtime=cc5.3.1_libc2.23_kernel4.4.0
g++ -o concurrent_hash_map.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/tbb/concurrent_hash_map.cpp
g++ -o concurrent_queue.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/tbb/concurrent_queue.cpp
g++ -o concurrent_vector.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/tbb/concurrent_vector.cpp
g++ -o dynamic_link.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/tbb/dynamic_link.cpp
g++ -o itt_notify.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/tbb/itt_notify.cpp
g++ -o cache_aligned_allocator.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/tbb/cache_aligned_allocator.cpp
g++ -o pipeline.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/tbb/pipeline.cpp
In file included from ../../src/tbb/pipeline.cpp:21:0:
../../include/tbb/pipeline.h:328:74: warning: 'template<class _Tp> struct std::has_trivial_copy_constructor' is deprecated [-Wdeprecated-declarations]
 template<typename T> struct tbb_trivially_copyable { enum { value = std::has_trivial_copy_constructor<T>::value }; };
                                                                          ^
In file included from /usr/include/c++/5/bits/move.h:57:0,
                 from /usr/include/c++/5/bits/stl_pair.h:59,
                 from /usr/include/c++/5/bits/stl_algobase.h:64,
                 from /usr/include/c++/5/memory:62,
                 from ../../include/tbb/tbb_stddef.h:420,
                 from ../../include/tbb/tbb_machine.h:117,
                 from ../../include/tbb/atomic.h:32,
                 from ../../include/tbb/pipeline.h:24,
                 from ../../src/tbb/pipeline.cpp:21:
/usr/include/c++/5/type_traits:1389:12: note: declared here
     struct has_trivial_copy_constructor
            ^
g++ -o queuing_mutex.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/tbb/queuing_mutex.cpp
g++ -o queuing_rw_mutex.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/tbb/queuing_rw_mutex.cpp
g++ -o reader_writer_lock.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/tbb/reader_writer_lock.cpp
g++ -o spin_rw_mutex.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/tbb/spin_rw_mutex.cpp
g++ -o x86_rtm_rw_mutex.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/tbb/x86_rtm_rw_mutex.cpp
g++ -o spin_mutex.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/tbb/spin_mutex.cpp
g++ -o critical_section.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/tbb/critical_section.cpp
g++ -o mutex.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/tbb/mutex.cpp
g++ -o recursive_mutex.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/tbb/recursive_mutex.cpp
g++ -o condition_variable.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/tbb/condition_variable.cpp
g++ -o tbb_thread.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/tbb/tbb_thread.cpp
g++ -o concurrent_monitor.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/tbb/concurrent_monitor.cpp
g++ -o semaphore.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/tbb/semaphore.cpp
g++ -o private_server.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/tbb/private_server.cpp
g++ -o rml_tbb.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/rml/client/rml_tbb.cpp
sh ../../build/version_info_linux.sh g++ -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X -I../../src -I../../src/rml/include -I../../include -I. >version_string.ver
g++ -o tbb_misc.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include -I. ../../src/tbb/tbb_misc.cpp
g++ -o tbb_misc_ex.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/tbb/tbb_misc_ex.cpp
g++ -o task.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/tbb/task.cpp
g++ -o task_group_context.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/tbb/task_group_context.cpp
g++ -o governor.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/tbb/governor.cpp
g++ -o market.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/tbb/market.cpp
g++ -o arena.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/tbb/arena.cpp
g++ -o scheduler.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/tbb/scheduler.cpp
g++ -o observer_proxy.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/tbb/observer_proxy.cpp
g++ -o tbb_statistics.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/tbb/tbb_statistics.cpp
g++ -o tbb_main.o -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -std=c++0x -D_TBB_CPP0X  -I../../src -I../../src/rml/include -I../../include ../../src/tbb/tbb_main.cpp
sh ../../build/generate_tbbvars.sh
echo "INPUT (libtbb.so.2)" > libtbb.so
g++ -E -x c++ ../../src/tbb/lin64-tbb-export.def -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64  -fPIC -D__TBB_BUILD=1 -Wall -Wno-parentheses -Wno-non-virtual-dtor -DTBB_NO_LEGACY=1 -I../../src -I../../src/rml/include -I../../include > tbb.def
g++ -fPIC -o libtbb.so.2 concurrent_hash_map.o concurrent_queue.o concurrent_vector.o dynamic_link.o itt_notify.o cache_aligned_allocator.o pipeline.o queuing_mutex.o queuing_rw_mutex.o reader_writer_lock.o spin_rw_mutex.o x86_rtm_rw_mutex.o spin_mutex.o critical_section.o mutex.o recursive_mutex.o condition_variable.o tbb_thread.o concurrent_monitor.o semaphore.o private_server.o rml_tbb.o tbb_misc.o tbb_misc_ex.o task.o task_group_context.o governor.o market.o arena.o scheduler.o observer_proxy.o tbb_statistics.o tbb_main.o    -ldl -lpthread -lrt -shared -Wl,-soname=libtbb.so.2 -m64  -Wl,--version-script,tbb.def
make[2]: Leaving directory '/tmp/RtmpwVRmg2/R.INSTALL769137faa0b0/RcppParallel/src/tbb/build/lib_release'
make -C "../build/lib_release"  -r -f ../../build/Makefile.tbbmalloc cfg=release malloc
make[2]: Entering directory '/tmp/RtmpwVRmg2/R.INSTALL769137faa0b0/RcppParallel/src/tbb/build/lib_release'
g++ -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64    -DTBB_NO_LEGACY=1 -fno-rtti -fno-exceptions -D__TBBMALLOC_BUILD=1 -Wno-parentheses -Wno-non-virtual-dtor -fPIC -I../../src -I../../src/rml/include -I../../include -I../../src/tbbmalloc -I../../src/tbbmalloc ../../src/tbbmalloc/backend.cpp
g++ -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64    -DTBB_NO_LEGACY=1 -fno-rtti -fno-exceptions -D__TBBMALLOC_BUILD=1 -Wno-parentheses -Wno-non-virtual-dtor -fPIC -I../../src -I../../src/rml/include -I../../include -I../../src/tbbmalloc -I../../src/tbbmalloc ../../src/tbbmalloc/large_objects.cpp
g++ -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64    -DTBB_NO_LEGACY=1 -fno-rtti -fno-exceptions -D__TBBMALLOC_BUILD=1 -Wno-parentheses -Wno-non-virtual-dtor -fPIC -I../../src -I../../src/rml/include -I../../include -I../../src/tbbmalloc -I../../src/tbbmalloc ../../src/tbbmalloc/backref.cpp
g++ -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64    -DTBB_NO_LEGACY=1 -fno-rtti -fno-exceptions -D__TBBMALLOC_BUILD=1 -Wno-parentheses -Wno-non-virtual-dtor -fPIC -I../../src -I../../src/rml/include -I../../include -I../../src/tbbmalloc -I../../src/tbbmalloc ../../src/tbbmalloc/tbbmalloc.cpp
g++ -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64    -DTBB_NO_LEGACY=1 -fno-rtti -fno-exceptions -D__TBBMALLOC_BUILD=1 -Wno-parentheses -Wno-non-virtual-dtor -fPIC -o itt_notify_malloc.o -I../../src -I../../src/rml/include -I../../include ../../src/tbb/itt_notify.cpp
g++ -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64    -DTBB_NO_LEGACY=1 -fno-rtti -fno-exceptions -D__TBBMALLOC_BUILD=1 -Wno-parentheses -Wno-non-virtual-dtor -fPIC -I../../src -I../../src/rml/include -I../../include -I../../src/tbbmalloc -I../../src/tbbmalloc -I. ../../src/tbbmalloc/frontend.cpp
echo "INPUT (libtbbmalloc.so.2)" > libtbbmalloc.so
g++ -E -x c++ ../../src/tbbmalloc/lin64-tbbmalloc-export.def -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64    -DTBB_NO_LEGACY=1 -fno-rtti -fno-exceptions -D__TBBMALLOC_BUILD=1 -I../../src -I../../src/rml/include -I../../include > tbbmalloc.def
gcc -fPIC -o libtbbmalloc.so.2 backend.o large_objects.o backref.o  tbbmalloc.o  itt_notify_malloc.o frontend.o  -ldl -lpthread -lrt -shared -Wl,-soname=libtbbmalloc.so.2 -m64  -Wl,--version-script,tbbmalloc.def
g++ -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64   -Wall -DTBB_NO_LEGACY=1 -fPIC -D__TBBMALLOC_BUILD=1 -I../../src -I../../src/rml/include -I../../include -I../../src/tbbmalloc -I../../src/tbbmalloc ../../src/tbbmalloc/proxy.cpp
g++ -c -MMD -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64   -Wall -DTBB_NO_LEGACY=1 -fPIC -D__TBBMALLOC_BUILD=1 -I../../src -I../../src/rml/include -I../../include -I../../src/tbbmalloc -I../../src/tbbmalloc ../../src/tbbmalloc/tbb_function_replacement.cpp
echo "INPUT (libtbbmalloc_proxy.so.2)" > libtbbmalloc_proxy.so
g++ -E -x c++ ../../src/tbbmalloc/lin64-proxy-export.def -DDO_ITT_NOTIFY -g -O2 -DUSE_PTHREAD -m64   -Wall -DTBB_NO_LEGACY=1 -I../../src -I../../src/rml/include -I../../include > tbbmallocproxy.def
g++ -fPIC -o libtbbmalloc_proxy.so.2 proxy.o tbb_function_replacement.o  -ldl -lpthread -lrt libtbbmalloc.so -shared -Wl,-soname=libtbbmalloc_proxy.so.2 -m64  -Wl,--version-script,tbbmallocproxy.def
make[2]: Leaving directory '/tmp/RtmpwVRmg2/R.INSTALL769137faa0b0/RcppParallel/src/tbb/build/lib_release'
make[1]: Leaving directory '/tmp/RtmpwVRmg2/R.INSTALL769137faa0b0/RcppParallel/src/tbb/src'
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -std=c++11 -I../inst/include/ -DRCPP_PARALLEL_USE_TBB=1 -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/BH/include"   -fpic  -g -O2  -c options.cpp -o options.o
In file included from ../inst/include/tbb/tbb.h:65:0,
                 from ../inst/include/RcppParallel/TBB.h:6,
                 from ../inst/include/RcppParallel.h:22,
                 from options.cpp:2:
../inst/include/tbb/pipeline.h:328:74: warning: 'template<class _Tp> struct std::has_trivial_copy_constructor' is deprecated [-Wdeprecated-declarations]
 template<typename T> struct tbb_trivially_copyable { enum { value = std::has_trivial_copy_constructor<T>::value }; };
                                                                          ^
In file included from /usr/include/c++/5/bits/move.h:57:0,
                 from /usr/include/c++/5/bits/stl_pair.h:59,
                 from /usr/include/c++/5/bits/stl_algobase.h:64,
                 from /usr/include/c++/5/bits/char_traits.h:39,
                 from /usr/include/c++/5/ios:40,
                 from /usr/include/c++/5/ostream:38,
                 from ../inst/include/tthread/tinythread.h:88,
                 from ../inst/include/RcppParallel/TinyThread.h:8,
                 from ../inst/include/RcppParallel.h:6,
                 from options.cpp:2:
/usr/include/c++/5/type_traits:1389:12: note: declared here
     struct has_trivial_copy_constructor
            ^
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o RcppParallel.so options.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/RcppParallel/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'RcppParallel'
    finding HTML links ... done
    RcppParallel-package                    html  
    RcppParallelFlags                       html  
    setThreadOptions                        html  
** building package indices
** testing if installed package can be loaded
* DONE (RcppParallel)
Making 'packages.html' ... done